| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3214250 | NA (NA) | 6 (0.120) | 5/268 | 6.1 | NA | noncoding (12/31 nt) | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3214257 | NA (NA) | noncoding (19/31 nt) | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3214098‑3214250‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcggatggcgaCGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGTTTTGG < CP009273/3214257‑3214117 GCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATC < 2:344539/144‑1 GGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCG < 1:715664/149‑1 GGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGA < 2:449580/144‑1 CGCTCAAAAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACCGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGctttc < 2:520561/144‑6 CCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTACTATCAAATCGGATGGCGACGTCGTATCGCCATC < 1:679168/149‑1 CCAAAACGACCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGACGTCGTATCGCCATC < 1:401876/149‑1 gACGATCCGGATGGAGCCGCCACTGACACTGACCATTGGACAGTGTGAACTGGGGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGACGTCGTATCGCCAT < 2:411850/143‑1 tgtTCCGCATGTAGCCGCAACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGACGTCGTATCGCCATCC < 2:128386/141‑1 GCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTC < 1:49444/149‑1 gCTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGGAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACA < 2:485273/143‑1 aacaGATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGA > 2:664246/5‑144 TCGGATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGAT < 2:411202/144‑1 CGGATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGTTTT < 1:769434/149‑1 GATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGGTCGT > 2:310201/1‑144 GATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGT > 2:376285/1‑144 TGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGTTT > 2:697889/1‑144 GGCGACGTGCTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGTTTT < 2:122362/144‑1 GCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCTGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTGAATGCGGATCGTTTTG < 2:595410/144‑1 CGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGTTTTGG > 2:16833/1‑144 GCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3214098‑3214250‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcggatggcgaCGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGTTTTGG < CP009273/3214257‑3214117 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |