New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3214250NA (NA)6 (0.120) 5/268 6.1 NA noncoding (12/31 nt) REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences
?CP009273 = 3214257 NA (NA)noncoding (19/31 nt) REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

CCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTCACCACGCATTTT  >  CP009273/3214117‑3214390
                                                                                                                                            |                                                                                                                                     
ccAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCg                                                                                                                                    <  2:16833/144‑1 (MQ=255)
 cAAAACGATCCGCATTCAACCGCCACTGACACTGACCATTGAACAGTGTGAACAGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGc                                                                                                                                   >  2:595410/1‑144 (MQ=255)
  aaaaCGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATAGCACGTCGcc                                                                                                                                  >  2:122362/1‑144 (MQ=255)
  aaaaCGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCg                                                                                                                             >  1:769434/1‑149 (MQ=255)
   aaaCGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCa                                                                                                                                 <  2:697889/144‑1 (MQ=255)
     aCGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATc                                                                                                                               <  2:376285/144‑1 (MQ=255)
     aCGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATc                                                                                                                          <  1:103242/149‑1 (MQ=255)
     aCGACCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATc                                                                                                                               <  2:310201/144‑1 (MQ=255)
        aTCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGa                                                                                                                            >  2:411202/1‑144 (MQ=255)
         tCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATctgtt                                                                                                                           <  2:664246/144‑5 (MQ=255)
         tCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCtttt                                                                                                                      >  1:235165/1‑149 (MQ=255)
         tCCGCAGTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCtttt                                                                                                                      <  1:72884/149‑1 (MQ=255)
           ctcATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTta                                                                                                                    <  1:289308/147‑1 (MQ=255)
               ttGAACCGCCACTGACACTGACCATTGAACAGTGTTAACTGGTGATCAAAGCGGCGCGTAAGGCGCGGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATacg                                                                                                                <  1:104008/149‑1 (MQ=255)
               ttGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCttttt                                                                                                                     <  2:774690/144‑1 (MQ=255)
               ttGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATacg                                                                                                                >  1:169801/1‑149 (MQ=255)
                  caCCGCCACTGACACTGACCATTGAACAGTGGGAACGGGTGATCAAAGCGGCGCGGAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATacgacg                                                                                                             <  1:384471/148‑1 (MQ=255)
                       ccACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAGGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTAc                                                                                                        >  1:628023/1‑149 (MQ=255)
                          ctgacactgacCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGt                                                                                                          >  2:808757/1‑144 (MQ=255)
                          ctgacactgacCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGt                                                                                                          >  2:647527/1‑144 (MQ=255)
                           tgacactgacCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGGAGGccc                                                                                                    >  1:880216/1‑149 (MQ=255)
                                    ccATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAg                                                                                                <  2:318830/144‑1 (MQ=255)
                                       ctGAACAGTGGGAACTGGTGAGCAAGGCGGCGCGCAAGGCGCTGCCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCatcatc                                                                                        <  1:127645/148‑1 (MQ=255)
                                        tggaCAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCAGGCGAGTAAGTGTCGAAGAAGCGTAATATCAAAGCGGATGGCGATACGACGTCGCCATCCGATCTTTTGATACGACGCGTACGCCCGCAGGcat                                                                                            <  2:68649/141‑1 (MQ=255)
                                          accAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGAGGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGcatca                                                                                          <  2:93858/142‑1 (MQ=255)
                                               tgtgAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATGCGCTccag                                                                                >  1:38268/1‑147 (MQ=255)
                                                  gAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTcc                                                                                  >  2:454236/1‑144 (MQ=255)
                                                    aCTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCgg                                                                                <  2:838106/144‑1 (MQ=255)
                                                     cTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTaa                                                                          <  1:138550/149‑1 (MQ=255)
                                                      tGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAAc                                                                         <  1:857597/149‑1 (MQ=255)
                                                           agcAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAAc                                                                         <  2:266934/142‑1 (MQ=255)
                                                           aTCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCAc                                                                    >  1:542617/1‑149 (MQ=255)
                                                           aTCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGAACTTTTTATACAACGCGTACGCCCGCAGGCATCACCCGCTCCGGCGTTAAc                                                                         >  2:300260/1‑144 (MQ=255)
                                                             cAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACCGCACGc                                                                  >  1:142468/1‑149 (MQ=255)
                                                              aaaGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCt                                                                 >  1:746753/1‑149 (MQ=255)
                                                               aaGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCtt                                                                >  1:536576/1‑149 (MQ=255)
                                                                     cgcgTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGCCGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCACCATCCGCTCCGGCGCTAACAGCACGCttt                                                               >  2:51649/1‑144 (MQ=255)
                                                                       cgTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGcc                                                        >  1:734573/1‑149 (MQ=255)
                                                                          aaGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTCTACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTc                                                     <  1:133537/149‑1 (MQ=255)
                                                                             gcgcTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATc                                                  <  1:458890/149‑1 (MQ=255)
                                                                                       ccATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGca                                        <  1:366007/149‑1 (MQ=255)
                                                                                          tGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCCTCATCCGCTCCGCCGTCCACAGCCCGCTTCCCCTCCCCCCCTCGGTTTccc                                          >  2:397130/1‑143 (MQ=255)
                                                                                          tGCCAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGTATCACACGATCTTTCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGcacac                                     <  1:450477/149‑1 (MQ=255)
                                                                                                     gtCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGGTTCCGCACACAACAgcatgca                          >  1:265273/1‑149 (MQ=255)
                                                                                                      tCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACGACAgcatgcat                         >  1:43483/1‑149 (MQ=255)
                                                                                                      tCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCCGCGACATCGGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAgcatgcat                         >  1:260339/1‑149 (MQ=255)
                                                                                                      tCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATACGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACACCAgcatgcat                         >  1:494152/1‑149 (MQ=255)
                                                                                                        gaagaaGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGAGCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCCCGCTTTCACTGCCGTCAACAATTTCCCCACACAAAAgcctc                            >  2:250858/1‑141 (MQ=255)
                                                                                                             agCGTAATATCAAATCGGATGGTGATACGACGTCGCCATCCGACCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCTTCGGTTTCCTCACACAACAGCATGCATTCCGACg                  <  1:470078/149‑1 (MQ=255)
                                                                                                                     atCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGttt               <  2:564591/144‑1 (MQ=255)
                                                                                                                            cGGATGGCGATACGACGTCGCCATCCGATCTTTTTATCCGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGTATGCATTCCGACGTTTCACCACg        <  2:204233/144‑1 (MQ=255)
                                                                                                                             ggATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTCACCACGCAtttt  >  1:653105/1‑149 (MQ=255)
                                                                                                                                            |                                                                                                                                     
CCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTCACCACGCATTTT  >  CP009273/3214117‑3214390

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.