New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3576788 =	NA (NA)	8 (0.110)	6/276	NT	5.0%	intergenic (+10/‑55)	yrhA/insA	pseudogene, interrupted by IS1E/IS1 repressor TnpA
	?	CP009273	= 3649852	153 (2.190)					coding (249/333 nt)	hdeA	stress response protein acid‑resistance protein

TAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTAT  >  CP009273/3576640‑3576932                                                                                                                                                     |                                                                                                                                                  tAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAg                                                                                                                                                   <  1:1193610/149‑1 (MQ=255)     ctcgCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGa                                                                                                                                               <  1:456791/149‑1 (MQ=255)     cgctcGATTCCAGAACCTTCACTTAAAAACCTTTTTGCCGTAAACGAATTTTATAGAAATAATGATGATTTCATAAATCTTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGa                                                                                                                                               <  1:480613/147‑1 (MQ=255)       ctcGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGAtg                                                                                                                                             >  2:1106158/1‑149 (MQ=255)       ctcGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGAtg                                                                                                                                             >  1:776668/1‑149 (MQ=255)       ctcGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGGGTTCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGAtg                                                                                                                                             >  1:345891/1‑149 (MQ=255)            ttCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGGTGCTGcc                                                                                                                                        >  1:329131/1‑149 (MQ=255)            ttCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGcc                                                                                                                                        <  1:27314/149‑1 (MQ=255)            ttCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATAACAGGTGATGCTGcc                                                                                                                                        >  1:888175/1‑149 (MQ=255)              ccAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCaa                                                                                                                                      <  1:1228242/149‑1 (MQ=255)                aGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACt                                                                                                                                    >  1:1080483/1‑149 (MQ=255)                aGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACt                                                                                                                                    >  1:713493/1‑149 (MQ=255)                          gctAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAAATATGAGTGCATAAATCAAGACATATAACAACGGTTAGTGATCGTGGGTGATAGAATTTAGATATTTAATTATGACATTAAAGGCGGTGCTGCCAGCTTA‑CTGCTTTa                                                                                                                         >  2:381209/3‑149 (MQ=255)                           ttAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAg                                                                                                                        >  1:714273/1‑149 (MQ=255)                            tAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAgt                                                                                                                       <  2:1029849/149‑1 (MQ=255)                               aaaCCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTa                                                                                                                    >  1:525686/1‑149 (MQ=255)                               aaaCCTCGTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGCGATGCTGCCAACTTA‑CTGATTAAGTGTa                                                                                                                    >  2:13214/1‑149 (MQ=255)                                 aCCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTatg                                                                                                                  <  2:367793/149‑1 (MQ=255)                                  ccTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTatga                                                                                                                 <  1:397007/149‑1 (MQ=255)                                  ccTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTatga                                                                                                                 <  1:623429/149‑1 (MQ=255)                                    tttttGCCGTAAAAGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTGGTGTatgatg                                                                                                               >  2:860573/1‑149 (MQ=255)                                            gTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGttttt                                                                                                       >  2:1143617/1‑149 (MQ=255)                                             tAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATAGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGGGATGCTGACAACTTA‑CTGCTTTAGTGTATAATGGTGTGTTTg                                                                                                      >  2:578762/1‑149 (MQ=255)                                              aaaTGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGa                                                                                                     <  1:1160560/149‑1 (MQ=255)                                              aaaTGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGa                                                                                                     <  1:189991/149‑1 (MQ=255)                                              aaaTGAATGATATAGAAAGAAGAGTGATTTCATAAGNCCTTGTCTACCAGAACGGTTAGTGAGCGGGGATTATATCATTTCAATATTTACTTATGACATNAAAGGTGATGCTGCCAACTTG‑CTGATTTAGTGTATGATGGTGTTTTTGa                                                                                                     <  2:786921/149‑1 (MQ=25)                                                    aTTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGAAATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCt                                                                                               >  2:71265/1‑149 (MQ=255)                                                       ttATAGAAATAATGATGCTTTCACAAACCCTGATCTACAAGAACGGTTAGTGATCGGCGATTATAGCATTTCAATATTGACTTATGACATTAAAGGTGATGCTGCCTACTTA‑CTGATTTAGTGTAGGATGGTGTTTTTGAGGTGCTCCa                                                                                            <  2:819639/149‑1 (MQ=38)                                                       ttATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGTGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCTACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCa                                                                                            <  2:819631/149‑1 (MQ=255)                                                       ttATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCACCTTATCTGA‑TTAGTGTATGATGGTGTTTTTGAGGTGCTCCa                                                                                            <  1:606626/149‑1 (MQ=255)                                                         ataGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGt                                                                                          <  2:362873/149‑1 (MQ=255)                                                             aaaTAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAATGGCt                                                                                      >  2:1175741/1‑149 (MQ=255)                                                                taatGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGAGCTCCAGTGgctgct                                                                                   >  1:554021/1‑149 (MQ=255)                                                                     atgatTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTc                                                                              <  2:371856/149‑1 (MQ=255)                                                                        atTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTGCTGTTTCTAt                                                                           >  2:660063/1‑149 (MQ=255)                                                                           tCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTGCAGGTGCTCCAGTGGCTTCTGTTTCTATCAg                                                                        >  2:216961/1‑149 (MQ=255)                                                                           tCATAAACCCTGATCTACAAGAACGGGTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGATTCTATCAg                                                                        >  2:630346/1‑149 (MQ=255)                                                                             aTAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCt                                                                      <  2:971933/149‑1 (MQ=255)                                                                              tAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTg                                                                     <  1:1230265/149‑1 (MQ=255)                                                                              tAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTg                                                                     >  2:429615/1‑149 (MQ=255)                                                                              caaaCGCTGATCTACAAGGACGGTTAGTGATCGGGGATTATAGCATTTCTATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGTTCCAGTGGCTTCTGTTTCTGTcttctg                                                                     <  2:212683/148‑6 (MQ=25)                                                                                 aCCCTGATCTACAAGAACGGTTAGTGAGCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTcc                                                                  <  1:301595/149‑1 (MQ=255)                                                                                   ccTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTCCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTTGTGTATGAGGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCcct                                                                >  2:818833/1‑149 (MQ=255)                                                                                    cttaTCTTCAAGAACGGTTAGTGATCGGGGATTATAGCATTTTAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCcctc                                                               <  2:287324/146‑1 (MQ=255)                                                                                      gATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCcctcct                                                             <  2:168836/149‑1 (MQ=255)                                                                                       aTCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTg                                                            >  1:593489/1‑149 (MQ=255)                                                                                           aCAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCa                                                        <  2:722818/149‑1 (MQ=255)                                                                                               gAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATTGTGTCTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTa                                                    <  1:175705/149‑1 (MQ=255)                                                                                                 accgTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACt                                                  <  1:529176/146‑1 (MQ=255)                                                                                                        gTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCGGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACgggg                                           <  2:876902/149‑1 (MQ=255)                                                                                                           aTCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGggtgg                                        >  1:1069212/1‑149 (MQ=255)                                                                                                           aTCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGggtgg                                        >  2:441279/1‑149 (MQ=255)                                                                                                                     ataGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTTTTTTTTTTTAGTGGCTTCTGTGTCTATCAGCTTTCCCTCCTGTTACGCTACTGCCGGGGTGGTCCGTACCgg                              >  2:542454/1‑149 (MQ=17)                                                                                                                          aTTTCAATATTTACTTATGCCATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGACTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCaaaa                         <  2:1080084/149‑1 (MQ=255)                                                                                                                          aTTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCaaaa                         <  1:274468/149‑1 (MQ=255)                                                                                                                            ttCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGc                       <  2:931411/149‑1 (MQ=255)                                                                                                                              cAATATTTACTTATGACATTAATGGTGATGCTGCCAACTTA‑CTGATTGAGTTTATGATGGTATTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCACTCCTGTTCAGCTACTGACGGGGTGGCCCTTAACGGCAAAACCAc                     >  2:445505/1‑149 (MQ=14)                                                                                                                              cAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCAc                     >  1:331005/1‑149 (MQ=255)                                                                                                                              cAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCAc                     <  1:270497/149‑1 (MQ=255)                                                                                                                                  atTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCAccgcc                 <  1:484889/149‑1 (MQ=255)                                                                                                                                  atTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCAccgcc                 <  1:1099117/149‑1 (MQ=255)                                                                                                                                     tACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTACAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGa              <  2:1060425/149‑1 (MQ=255)                                                                                                                                      aCTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGAc             <  2:1069212/149‑1 (MQ=40)                                                                                                                                        ttATGACATTAAAGGTGATGCTGCCAAATTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTGCTGACGGGGTGGTGCGTGACGGCAAAAGCGCCGCCGGACAt           >  2:700702/1‑149 (MQ=255)                                                                                                                                          aTGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCTCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCGATAGCACCGCCGGACATcg         >  2:533395/1‑148 (MQ=255)                                                                                                                                          aTGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCa         >  1:561075/1‑149 (MQ=38)                                                                                                                                           tGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTTTTGTTTTTCAGTGGCGTCTGTTTCTATCAGCTGTCCCTCATGTTCGGTTACTGACGGGGGGGTGCGTTACGTCAACAGCCCGGCCGGagagccg        >  2:1005985/1‑143 (MQ=11)                                                                                                                                            gACATCAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTGTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGCCGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAgc       <  2:1190284/149‑1 (MQ=16)                                                                                                                                               aTTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCt    >  2:900839/1‑149 (MQ=33)                                                                                                                                                 tAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTAt  <  1:1103141/149‑1 (MQ=32)                                                                                                                                                 tAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTAt  <  1:925346/149‑1 (MQ=32)                                                                                                                                                 tAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTAt  <  2:714273/149‑1 (MQ=32)                                                                                                                                                     |                                                                                                                                                  TAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTA‑CTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTAT  >  CP009273/3576640‑3576932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.