Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC	CP009273	1,716,881	(GAT)4→3	7.0%	coding (504‑506/2013 nt)	ydhK →	putative efflux protein (PET) component of YdhJK efflux pump

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1716873 =	58 (0.830)	4 (0.060)	4/254	NT	7.0%	coding (496/2013 nt)	ydhK	putative efflux protein (PET) component of YdhJK efflux pump
	?	CP009273	= 1716869	53 (0.820)					coding (492/2013 nt)	ydhK	putative efflux protein (PET) component of YdhJK efflux pump

CGTCGCGTATGCATTTCAACTGGCGGGCTACACGGCTGCCATCATCGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGCCATTCGTGCAGCACATGAAGGGGT  >  CP009273/1716728‑1717015                                                                                                                                              |                                                                                                                                                   cGTCGCGGATCCATTTCAACTGGCGGGCTACACGGCTGCCATCAGCGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCatgatga                                                                                                                                             >  1:110586‑M2/1‑142 (MQ=255)   tCGCGTATGCATTTCAACTGGCGGGCTACACTGCTGCCATCATCGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGTTGCCGGTTATTGCTTAGGCAAGCAGTGGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCatgatgatg                                                                                                                                           >  1:1220064‑M2/1‑140 (MQ=255)        tATGCATTTCAACTGGCGGGCTACACGGCTGCCATCATCGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATgatgatgatgat                                                                                                                                      >  1:514333/1‑149 (MQ=255)         aTGCTTTTCACCTGGCGGGCTACTCGGCTGCCATCATCGCCTTTCCGATGGTTAATCTGACTGAGCCCAGCCAGCTGTGGGTTATCGCTCAGGCGCGCGTTTGCGAGGTATCAGTCGCTTTTTTGTGGGGCGGCattatgttgattttc                                                                                                                                     <  2:240387/149‑5 (MQ=255)         aTGCATTTCAACTGGCGGGCTACACGGCTGCCATCATCGCCTTTCCGATGGTTAATCTTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATc                                                                                                                                     <  2:951561/149‑1 (MQ=255)           gCATTTCAACTGGCGGGCTACACGGCTGCCATCATCGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCatgatgatgatcctgcc                                                                                                                                   <  1:355174‑M2/149‑18 (MQ=255)             aTTTCAACTGGCGGGCTACAGGGCTGCCATCATCGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGAGCGAGTTTGCGAGGTGATGGCCGGTATTTTTTGAGGCGGCatgatgatgatgctgccgc                                                                                                                                 <  2:865182‑M2/149‑20 (MQ=255)             aTTTCAACTGGCGGGCTACACGGCTGCCATCATCGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGCTATCGCTCAGGCAACAAAAGGCTTGGGGATAGTCGGTATTTTGTGCGGCGGCGTGATGATGATTATCGTGc                                                                                                                                 >  1:847162/1‑149 (MQ=255)                          ggCTACACGGCTGCCATCATCGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGa                                                                                                                    <  2:755118/149‑1 (MQ=255)                            cTACACGGCTGCCATCATCGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATg                                                                                                                  <  1:535675/149‑1 (MQ=255)                               cacGGCTGCCATCATCGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGGTCCTGCCGAGCAGTTCCGATGCtc                                                                                                               >  1:1196598/1‑148 (MQ=255)                                  ggCTGCCATCATCGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTg                                                                                                            <  1:1199437/149‑1 (MQ=255)                                   gCTGCCATCATCGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGAGGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGc                                                                                                           >  2:552697/1‑149 (MQ=255)                                      gCCATCATCGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGGGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCatgatgatgatcctgccgagcagttccgatgctactgccctttt                                                                                                        >  1:461924‑M2/1‑105 (MQ=255)                                           catcGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTaa                                                                                                   <  1:780219/149‑1 (MQ=255)                                              cGCCTTGCCGATGGTTAATATTAGTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGACGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCg                                                                                                <  2:778826/149‑1 (MQ=255)                                                     ccGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGaa                                                                                         <  2:1067505/149‑1 (MQ=255)                                                      cGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGaaa                                                                                        >  1:376605/1‑149 (MQ=255)                                                       gATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGGGGTAATAGTCGGTATTTTGTGCGGCGGCATGCTGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTGAACCGCATTGaaaa                                                                                       >  2:1043200/1‑149 (MQ=255)                                                        aTGGTTAATCTTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGCAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGaaaaa                                                                                      <  2:677663/149‑1 (MQ=255)                                                         tGGTTAAGATTACGTAGGCCACCCAGCTGTGGGATATCGCTCTGGCGCGCGTTTTCGAGGTAATAGTCGTTATTTTGTGCGGCAGCAGGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAAc                                                                                     <  2:460026/149‑1 (MQ=255)                                                           gTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACAt                                                                                   >  2:1172435/1‑149 (MQ=255)                                                           gTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATGTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACAt                                                                                   >  1:515974/1‑149 (MQ=255)                                                            ttAATATTCCGGAGGCCGGCCAGCTGGGGGGTGTCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATg                                                                                  <  2:256020/149‑1 (MQ=255)                                                                 atTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGATGTAATAGTCGGTATTTTGTACGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTAATGCCGTTTTAACCGCATTGAAGAACCTTCACGc                                                                             >  2:473328/1‑149 (MQ=255)                                                                 atTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGc                                                                             >  1:1192663/1‑149 (MQ=255)                                                                      tGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGGGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATCCACGCCCGag                                                                        >  1:1013261/1‑148 (MQ=255)                                                                      tGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGAGTTGGCGAGGTAATAGTCGGAATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCGTTTAACCGCATGGAAAAACATGAACGCCAGAt                                                                        >  1:617836/1‑149 (MQ=255)                                                                          gccagccaGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATCGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGACCAGTTCCGATGCTACTGCCCTTTTAACCGCACGGAAAAACATGCACGCCCGATTACt                                                                    >  2:730609/1‑149 (MQ=255)                                                                                cagcGGTGGGATATCGCTCAGGTGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACa                                                              <  2:672161/149‑1 (MQ=255)                                                                                  gcTGTGGCATCTCGCTAAGGGCCGCGTTTGTGAGGTAATAGCCGGTATTTTTTGCGGCGGTATGATGATGATCACTCCGCTGCGCAGTTCCGATGCTACTGCCCTTTTCCCCGCCTTGAAAAACCTGCACGCCCGATTACTGGAACATg                                                            <  2:476186/149‑1 (MQ=255)                                                                                   cTGTGGGATATCGCTCAGGCGCGCGTTTGCGGGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGc                                                           >  1:963041/1‑149 (MQ=255)                                                                                    tgtgGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGAACCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATCACTGGAACATGcc                                                          >  2:1052133/1‑149 (MQ=255)                                                                                      tgGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAg                                                        >  2:370664/1‑149 (MQ=255)                                                                                      tgGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAg                                                        >  1:123736/1‑149 (MQ=255)                                                                                              cGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTActct                                                >  2:665751/1‑149 (MQ=255)                                                                                                cTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTgg                                              <  2:758031/149‑1 (MQ=255)                                                                                                cTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTCCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTgt                                              <  2:1134976/149‑2 (MQ=255)                                                                                                 tCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGGGCAGTTCCGATGCTACTGCCCTTTTAACCGCAATGAAAATCATGCACGCCCGATTGCTGGAACATGCCCGTCTAcacagaa                                             <  2:858987/149‑7 (MQ=255)                                                                                                  cAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCatgatgatgatcctgccgagcagttccgatgctactgcccttttaaccgcattgaaaaaaatgcaggcccgattactggaacctgcccatttaatctcgcagcc                                            <  2:572936‑M2/149‑105 (MQ=255)                                                                                                    ggCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGc                                          <  1:224572/149‑1 (MQ=255)                                                                                                      cgcgcgTTTGCGAGGTAATAGGCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCt                                        <  1:502207/149‑1 (MQ=255)                                                                                                         ggggttGCGAGGTAATAGTCGGTATGTTGGGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTCACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGaa                                     <  1:294617/145‑1 (MQ=255)                                                                                                          cattcgCGATGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGaaa                                    <  1:1187249/144‑1 (MQ=255)                                                                                                             ttGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAAAATGCAAGTTTACTCTGGCATCCTGAaccaa                                 >  2:1119008/1‑149 (MQ=255)                                                                                                                cGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACCTGCCAGTTTACTCTGGCAGCCTGAAACAACCg                              >  2:407672/1‑149 (MQ=255)                                                                                                                 gAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAATACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGa                             <  1:548595/149‑1 (MQ=255)                                                                                                                 gAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGa                             <  1:1234658/149‑1 (MQ=255)                                                                                                                         aGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGCCATTc                     >  1:824950/1‑149 (MQ=255)                                                                                                                           tCGGTATTTTGTGCGGCGGCATGATAATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGCTTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCCAGGCCATTCgg                   >  1:639524/1‑148 (MQ=255)                                                                                                                            cGGTATTTTGTGCGGCGTTATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTTCTGCCCCTTTAACCGCATTGAAAAACATGCACGCCCGACTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGCCATTCGTg                  <  2:618626/149‑1 (MQ=255)                                                                                                                              gTATTTTGTGCGGCGGCATGATGATGATGCTCCTGCCCGGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGCCATTCGTgca                <  1:1151454/149‑1 (MQ=255)                                                                                                                               tATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGCCATTCGTgcag               >  2:557075/1‑149 (MQ=255)                                                                                                                                 ttttGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTCCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACAGGCACGCCCGATTACTGGAACATGCCAGTCTACCCTGGCAGCCTTAAACAACCGATGCCATTCGTgcagcc             <  1:250725/149‑2 (MQ=255)                                                                                                                                  tttGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGCCATTCGTGCAGcac            >  2:767738/1‑149 (MQ=255)                                                                                                                                   ttGTGCCGCGGCATGATGATGATGAGCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAAGAACCGATGCCATTCGTGCAGcaca           <  2:1197084/149‑1 (MQ=255)                                                                                                                                      tgCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACCACCGATGCCATTCGTGCAGCACATGa        >  1:187479/1‑149 (MQ=255)                                                                                                                                        cggcggCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGCCATTCGTGCAGCACATGAAg      <  2:1213947/149‑1 (MQ=255)                                                                                                                                        cggcggCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTCAACCGCACTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTTAAACAACTGATGCCATTCATGCAGCACATGAAg      >  1:756506/1‑149 (MQ=255)                                                                                                                                         ggcggcATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCCCGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGCCATTCGTGCAGCACATGAAgc     >  2:316908/1‑148 (MQ=255)                                                                                                                                         ggcggcATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGCCATTCGTTCAGCAAATGAAgg     >  2:139977/1‑149 (MQ=255)                                                                                                                                         ggcggcATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGAGGCCATTCGTGCAGCACATGAAgg     >  2:597433/1‑149 (MQ=255)                                                                                                                                          gcggcATGATGATGATGATGCTGCCGAGCAGTTCCGACTCTGCTGCCCTTTTGACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGCCATTCGTGCAGCACATGAAggg    <  2:681627/149‑1 (MQ=255)                                                                                                                                            ggcATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGCCATTCGTGCAGCACATGAAGGGGt  <  2:649817/149‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                   CGTCGCGTATGCATTTCAACTGGCGGGCTACACGGCTGCCATCATCGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGCCATTCGTGCAGCACATGAAGGGGT  >  CP009273/1716728‑1717015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.