| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2420396 | 11 (0.110) | 100 (0.990) | 66/296 | 0.5 | 90.1% | intergenic (‑129/+92) | hisJ/argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit |
| ? | CP009273 | 3576788 = | NA (NA) | intergenic (+10/‑55) | yrhA/insA | pseudogene, interrupted by IS1E/IS1 repressor TnpA | |||||
Only 100 of 216 total aligned reads displayed.
ATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCC > CP009273/2420249‑2420544 | gcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCtt > 2:441592‑M1/140‑149 (MQ=255)aTAGCATCAGTTCTTTCATAATGTCCTCGACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTg < 1:373639‑M1/149‑2 (MQ=255)aTAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTGGACGTATTATTTTTCATTAAAAATGCTg > 2:842088‑M1/1‑148 (MQ=255) aacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagatggagtcattaccAAAAATGCTAAAGt < 1:1374647‑M1/14‑1 (MQ=255) aCCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTGTAGGGAATATTTACAGGTTTGTTAGACTTATCGTGCTATGAAATTGATCATAAAGGCAACATATCCCGTTCCGTTATACGTATTATTTTTCATTAAAAATGCTggtgct > 1:742530‑M1/1‑143 (MQ=255) ctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATg < 1:876450‑M1/17‑1 (MQ=255) cAGTTTTTGCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgc > 1:522993‑M1/1‑141 (MQ=255) aGTTTTTGCATATTCTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATAAAAAAAAAAAAAAAATGCTggtgatgct < 1:1621554‑M1/149‑10 (MQ=255) ttttCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgcca > 2:1644373‑M1/1‑136 (MQ=255) tctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCAttt < 1:572696‑M1/22‑1 (MQ=255) tctgaggcagcacctggcacggctgggacggaagtcgctgtcgttcgcaaaatcggtggagctgcatgacaaagtcagcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCAttt > 1:1150118‑M1/128‑149 (MQ=255) tttCATAATGTCCTCAACTGACAGTCTTTTTATAGTGCTTATTTTCAGGTTTGTTACACTTATCGTGCCATAAAATTGTCCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaa < 2:746501‑M1/149‑15 (MQ=255) tttCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgctaa > 1:312036‑M1/1‑135 (MQ=255) tCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaact < 2:1446483‑M1/149‑17 (MQ=255) gaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCaa > 2:1189063‑M1/125‑149 (MQ=255) gaggcagaccctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCaa > 1:214921‑M1/125‑149 (MQ=255) gctgcaccaggcacggatgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttgaaaaaaaaaaaAAAAATGCTTAAGTATGCATTTCAATGc > 1:1106785‑M1/122‑149 (MQ=255) aaTGTCCTCAACTGACAGTCTTTTTATTGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACTATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttact < 2:1148899‑M1/149‑21 (MQ=255) aaTGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCCTTAAAAATGCTggtgatgctgccaacttact > 2:500859‑M1/1‑129 (MQ=255) agcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGcac < 1:147212‑M1/30‑1 (MQ=255) aTGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttcctg > 1:944251‑M1/1‑128 (MQ=255) cacaaCTGACAGTCGTTTTATAGGGAATATTTACAGGTCTGTTACCCTTATCGGGCCATAAAACTGACCATCAAGGCAACATATCCCGCCCCGTTATACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgattta < 1:485108‑M1/147‑27 (MQ=255) tCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTACCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttag > 2:1179450‑M1/1‑122 (MQ=255) cAACTGACTGTCTTTTTATAGGTAGTATTTTCAGGTTTGTTACACTTATCGTGCCATAATATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagt < 2:275548‑M1/149‑29 (MQ=255) cAACTGACAGTCTTTTTATAGGGAATATTTACAGTTTTGTTACACTTATCGTGCTATAAAATTGACCATCAAGGCAACATATCCCGACCCGTTAGATGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagt < 2:1300947‑M1/149‑29 (MQ=255) ggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGca > 2:532537‑M1/108‑149 (MQ=255) gctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGcaa > 2:435497‑M1/107‑149 (MQ=255) gctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGcaa > 1:1533780‑M1/107‑149 (MQ=255) gcggggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaaggcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGcaa > 1:99273‑M1/107‑149 (MQ=255) tgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGcaaca < 1:1246569‑M1/45‑1 (MQ=255) aGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatg < 1:1321026‑M1/149‑37 (MQ=255) aGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatg < 2:1583093‑M1/149‑37 (MQ=255) tCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatggt > 2:1101069‑M1/1‑111 (MQ=255) ggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACaaa > 2:876450‑M1/103‑149 (MQ=255) ggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACaaa < 1:270038‑M1/47‑1 (MQ=255) tatgaaatatgtACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttga < 1:654943‑M1/144‑47 (MQ=255) taGGGAATATTTACAGGTTTGTTACACGTAGCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttga < 1:1616086‑M1/149‑47 (MQ=255) aGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgacgctgccaacttactgatttagtgtatgatggtgtttttgag < 2:742530‑M1/149‑48 (MQ=255) ggAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt > 1:1001766‑M1/1‑100 (MQ=255) tgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCAcc > 1:241158‑M1/90‑149 (MQ=255) catattCTCAGGATTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATGAAAAATGCTggtgatgctgccaacttactgatttagattatgagggtgtttttgaggtgc > 1:283886‑M1/2‑98 (MQ=255) aaTATTTACAGGTTTGTTACACTTATCGTGCCATAAAATGTACCATCAAGGCAACCTATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgc < 2:135972‑M1/149‑52 (MQ=255) tttttacAGGGCTGTGTCACTTATCGTGCCATAAATTGGACCATCAAGGTAACATAGCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacgtactgatttagtgtatgatggtgtttttgaggtgctc < 2:758405‑M1/147‑54 (MQ=255) ttctcaaaatcggtggagctgcatgacaaagtcatcggacatcatctgaacataacacactatccctacgttggcgtcattaccAAAAATGCCGACGTATGCATTTCCATGCACCACGATAGTGCTACAAACCTGGCGTGCaccataat < 2:632039‑M1/65‑4 (MQ=255) ctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCAtgatga > 1:1100222‑M1/83‑149 (MQ=255) tcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATgatgat < 2:152060‑M1/68‑1 (MQ=255) ttACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtt > 2:895077‑M1/1‑82 (MQ=255) acacTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttc < 2:1255848‑M1/149‑70 (MQ=255) ggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAg < 2:650345‑M1/79‑1 (MQ=255) cTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggggatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctat < 2:1456973‑M1/149‑73 (MQ=255) ttATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatc < 1:1189712‑M1/149‑74 (MQ=255) gctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTa > 2:333083‑M1/68‑149 (MQ=255) tgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagccattaccAAAAAGGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAAAAACCCTGGCGCACACCATGATGATCATCCCATCAGGTACAGCtt < 2:713958‑M1/88‑1 (MQ=255) tGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgt < 1:1514061‑M1/149‑80 (MQ=255) gacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTc > 2:683889‑M1/61‑149 (MQ=255) gacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTc > 1:864105‑M1/61‑149 (MQ=255) acaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacaAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGTGACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTcc < 2:222195‑M1/90‑1 (MQ=255) aaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCa < 2:1509496‑M1/92‑1 (MQ=255) aagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAg > 2:1284079‑M1/57‑149 (MQ=255) ttGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgtt < 2:1080584‑M1/149‑90 (MQ=255) tcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCTTTCCATCCGGTAGAGGTTCCCAGCGACGt < 1:95980‑M1/99‑1 (MQ=255) gggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTAt < 2:253958‑M1/101‑1 (MQ=255) aTCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTACCTCGAAATGCAgataatgcaaccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagcta > 2:1625382‑M1/1‑54 (MQ=255) ggCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgac > 1:450962‑M1/1‑49 (MQ=255) catcttatcccgcCCCGTTTGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttattgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacgg < 2:1231120‑M1/144‑103 (MQ=255) catatcCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttacggattacgagtatgagggtgtttttgaggtgctccagtggcttctgtttctatgagctgtccctcctgttcagctactgccggggt > 1:248310‑M1/2‑44 (MQ=255) acataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATACATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGa > 2:733928‑M1/36‑149 (MQ=255) cataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGAc < 2:1417056‑M1/115‑1 (MQ=255) cataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGAc > 1:1064699‑M1/35‑149 (MQ=255) ataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACa < 2:295824‑M1/116‑1 (MQ=255) atCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggt < 1:1336270‑M1/149‑109 (MQ=255) atCCCGCCCCGTTAGACGTATTATGTTTCATTAAAAATGCTggtgatgctgccaacttactgagttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggt < 1:899919‑M1/149‑109 (MQ=255) aaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACAtt < 1:776125‑M1/118‑1 (MQ=255) cccGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgc < 2:1530907‑M1/149‑111 (MQ=255) cGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccatcttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttaatctactgccggggtggttcgt > 2:555710‑M1/1‑37 (MQ=255) acactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTaaa > 2:1564086‑M1/29‑149 (MQ=255) tatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCg < 2:283412‑M1/125‑1 (MQ=255) tatcaataagttggagtcattaccAAAAATGCTGAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCg > 2:543528‑M1/25‑149 (MQ=255) atcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGa > 2:1326098‑M1/24‑149 (MQ=255) caataagttggagtcattaccAAAGATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCAGCGTTGACATTAAAGTCGaaa < 2:942581‑M1/128‑1 (MQ=255) caataagttggagtcattaccAAAAATGCGTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCGTCCCATCGACGTATCAGTCACCGTAGACATTAAAGTCGaaa < 1:1575904‑M1/128‑1 (MQ=255) tAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaa < 1:22992‑M1/149‑121 (MQ=255) ataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACATGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTGAAGTCGAAATa < 2:1268415‑M1/130‑1 (MQ=255) attattTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcacc > 1:422486‑M1/1‑22 (MQ=255) attattTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggggcgtaacggcaaaagcacc > 1:1649178‑M1/1‑22 (MQ=255) ggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTc > 1:1045251‑M1/13‑149 (MQ=255) gagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATactttttag < 1:49315‑M1/138‑3 (MQ=255) agtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGc < 2:1593896‑M1/139‑1 (MQ=255) taccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCCCCGTAGACATTAACGTCGAAATACTTTTTcgccacatt < 2:811674‑M1/145‑5 (MQ=255) cttaAAAATGCTggtgatgctgccaacttactgatttagtgtatgatgtggtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaaggaccgccggacatc < 2:1122202‑M1/148‑138 (MQ=255) accAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTg > 1:1331622‑M1/4‑149 (MQ=255) ttAAAAATGCTggtgatgctgccaacttactgatttcgtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtcccccctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatca < 2:191941‑M1/149‑139 (MQ=255) ccAAAAATGCTTAAGTATGCATTCCAATGCACCACGATAGTGCAACCAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGt > 1:1347191‑M1/3‑149 (MQ=255) aaaaaTGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctggccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagc < 2:317169‑M1/149‑141 (MQ=255) actgtttAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTTCCAGCGACGTATCAGTCACCGTAGACAATAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAg < 1:632039/144‑1 (MQ=255) aaTGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAg < 1:295824/149‑1 (MQ=255) gCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTg > 1:1282457/1‑149 (MQ=255) cTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGGATCAGGCACCGTAGGCATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGc < 2:1473138/149‑1 (MQ=255) ttAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCAACTTGTCGTAGGTGcc > 1:826113/1‑149 (MQ=255) ttAAGTATGCATTTCAATGCACCACCATAGGGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACCTTTTCGCCATCTTGTCGTAGGCGcc > 2:853510/1‑149 (MQ=255) | ATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCC > CP009273/2420249‑2420544 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |