breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,875,5210TC22.8% 92.4 / 18.6 58A28A (GCT→GCCyidXputative lipoprotein
*NC_0009133,875,5320AT22.4% 118.1 / 16.4 58H32L (CAT→CTT) yidXputative lipoprotein

Marginal new junction evidence (lowest skew 10 of 34 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 194603478 (0.710)8 (0.080) 8/512 8.5 9.4% intergenic (‑58/+81) ruvA/yobI component of RuvABC resolvasome, regulatory subunit/uncharacterized protein
?NC_000913 = 1946036 78 (0.740)intergenic (‑60/+79) ruvA/yobI component of RuvABC resolvasome, regulatory subunit/uncharacterized protein
* ? NC_000913 2442521 =83 (0.760)6 (0.060) 6/510 9.5 6.4% coding (758/2007 nt) mnmC fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme
?NC_000913 2442624 = 95 (0.900)coding (861/2007 nt) mnmC fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme
* ? NC_000913 4295832 =NA (NA)4 (0.040) 3/450 10.5 NA intergenic (+38/+604) gltP/yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
?NC_000913 = 4296394 NA (NA)noncoding (560/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
* ? NC_000913 = 271382982 (0.750)4 (0.040) 4/506 10.6 5.0% coding (934/1335 nt) srmB ATP‑dependent RNA helicase
?NC_000913 = 2713908 73 (0.700)coding (1013/1335 nt) srmB ATP‑dependent RNA helicase
* ? NC_000913 = 2276594 (0.040)11 (0.100)
+CGG
4/508 10.6 73.0% noncoding (1901/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 227660 = NA (NA)noncoding (1902/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 3945979 =104 (0.950)5 (0.050) 4/514 10.7 4.7% noncoding (2276/2904 nt) rrlC 23S ribosomal RNA of rrnC operon
?NC_000913 4039784 = NA (NA)noncoding (2266/2905 nt) rrlA 23S ribosomal RNA of rrnA operon
* ? NC_000913 3945961 =97 (0.890)5 (0.050) 4/514 10.7 5.0% noncoding (2258/2904 nt) rrlC 23S ribosomal RNA of rrnC operon
?NC_000913 4039802 = NA (NA)noncoding (2284/2905 nt) rrlA 23S ribosomal RNA of rrnA operon
* ? NC_000913 3945961 =97 (0.890)5 (0.050) 4/514 10.7 4.8% noncoding (2258/2904 nt) rrlC 23S ribosomal RNA of rrnC operon
?NC_000913 3945986 = 102 (0.960)noncoding (2283/2904 nt) rrlC 23S ribosomal RNA of rrnC operon
* ? NC_000913 = 342452661 (0.560)4 (0.040) 4/514 10.7 6.3% noncoding (2258/2904 nt) rrlD 23S ribosomal RNA of rrnD operon
?NC_000913 4039802 = NA (NA)noncoding (2284/2905 nt) rrlA 23S ribosomal RNA of rrnA operon
* ? NC_000913 = 342452661 (0.560)4 (0.040) 4/514 10.7 4.7% noncoding (2258/2904 nt) rrlD 23S ribosomal RNA of rrnD operon
?NC_000913 3945986 = 103 (0.970)noncoding (2283/2904 nt) rrlC 23S ribosomal RNA of rrnC operon