mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,295,984 | 0 | C | T | 50.3% | ‑0.3 / 233.9 | 187 | intergenic (+190/+452) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,268 | 0 | T | C | 24.3% | 169.3 / 50.4 | 115 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,688,287 | 0 | A | C | 22.1% | 285.1 / 10.6 | 164 | V296G (GTG→GGG) | bcsC | cellulose synthase subunit |
| * | NC_000913 | 1,311,197 | 0 | G | T | 20.2% | 242.3 / 11.0 | 120 | E37* (GAA→TAA) | tonB | membrane spanning protein in TonB‑ExbB‑ExbD transport complex |
| Marginal new junction evidence (lowest skew 10 of 63 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 186 (1.000) | 43 (0.250) | 32/442 | 4.8 | 21.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 139 (0.800) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 184 (0.990) | 24 (0.140) | 20/442 | 7.6 | 13.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 144 (0.830) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 4542690 | 57 (0.310) | 9 (0.050) | 8/456 | 12.5 | 11.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 90 (0.500) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 17 (0.110) | 5/396 | 13.1 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296394 | NA (NA) | noncoding (560/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 4542682 = | 60 (0.320) | 6 (0.030) | 6/456 | 13.6 | 7.5% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 90 (0.500) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 1326598 | 45 (0.240) | 5 (0.030) | 5/456 | 14.3 | 11.1% | coding (1853/1896 nt) | yciQ | enhancer of membrane protein expression; putative inner membrane protein |
| ? | NC_000913 | 1326635 = | 37 (0.210) | coding (1890/1896 nt) | yciQ | enhancer of membrane protein expression; putative inner membrane protein | |||||
| * | ? | NC_000913 | = 1687166 | 184 (0.990) | 6 (0.030) | 5/472 | 14.6 | 3.2% | coding (1212/1647 nt) | fumA | fumarate hydratase (fumarase A), aerobic Class I |
| ? | NC_000913 | 1687170 = | 183 (0.990) | coding (1208/1647 nt) | fumA | fumarate hydratase (fumarase A), aerobic Class I | |||||
| * | ? | NC_000913 | 1095115 = | NA (NA) | 4 (0.020) | 4/448 | 14.9 | 13.6% | noncoding (388/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | 1095315 = | 27 (0.150) | noncoding (188/1258 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 3381847 | 142 (0.770) | 4 (0.020) | 4/456 | 15.0 | 2.8% | coding (1105/1368 nt) | degQ | serine endoprotease, periplasmic |
| ? | NC_000913 | = 3381859 | 143 (0.800) | coding (1117/1368 nt) | degQ | serine endoprotease, periplasmic | |||||
| * | ? | NC_000913 | 2626287 = | 189 (1.020) | 4 (0.020) | 4/458 | 15.1 | 2.1% | coding (1173/1542 nt) | ppx | exopolyphosphatase |
| ? | NC_000913 | 2626515 = | 187 (1.040) | coding (1401/1542 nt) | ppx | exopolyphosphatase | |||||