| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1102930 | 124 (1.250) | 8 (0.080) | 4/456 | 8.9 | 6.1% | coding (267/651 nt) | csgD | csgBAC operon transcriptional regulator |
| ? | NC_000913 | = 1103037 | 129 (1.350) | coding (160/651 nt) | csgD | csgBAC operon transcriptional regulator | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
TCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCT‑TTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATG‑TCGCGGTACGGGTAATCTTCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1102673‑1102930‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcaggcTCTATTATTCTTCTGGATATGATGGAAGCGGATAAAAAGCTTATCCATTATTGGCAGGATACTTTGAGCAGGAAAAACAACAATATCAAAATATTGTTGCTAAATACGCCTGAAGATTACCCGTACCGCGACATTGAAAACTGGCCTCATATCAACGGCGTTTTTTATTCCATGGAGGATCAAGAACGTGTTGTCAATGGGTTGCAAGGCGTCCTGCGCGGCGAATGCTACTTTACGCAAAA < NC_000913/1103037‑1102796 TCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATTTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCT‑TTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATG‑TCGCGGTACGGGTAATC > 2:709301/1‑251TCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCT‑TTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTTACAACACGTTCTTGATCTCCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATG‑TCGCGGGACGGGGAATC > 2:1028583/1‑251 gttttgAGACGCGCCGGTACTCGTGTTATTCAGGGTCGTGTTTTCCGGATGAGTAAGGAGGGCTGATTACGTGGTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTGGCTGGCAAGCT‑TTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTTCAACCCATTAACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATG‑TCGCGGTACGGGTAATCTT < 2:63972/245‑1 TTAGACGCGCCTATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCT‑TTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATG‑TCGCGGTACGGGTAATCTTCAGG < 1:429623/251‑1 TTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCT‑TTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATG‑TCGCGGTACGGGTAATCTTCAGG < 1:1023590/251‑1 TAGGCGCGCCGATACGCAGCTTATTCAGGGTCTCTTTTTCCCGGTGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCT‑TTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATG‑TCGCGGTACGGGTAATCTTCAGGC < 2:940265/251‑1 TAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCT‑TTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATG‑TCGCGGTACGGGTAATCTTCAGGC < 1:951745/251‑1 GGAGGGCTGATTCCGTGCTGTTATAACGATAGTTATCTGAATGCGTAATCAGGTAGCTGGCAAGCT‑TTTGCGAAAAGTAGGATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACCCGTTCTTGATCCACCATGGAATAAAAAACACCGTTGATATGAGGCCAGTTTTCAATG‑CCGCGGGACGGGTAACACTCAGGCTCTATTATTCTTCTGGTAATGATGGAAGCGGATAAAAAGCTTATCCATCAT > 1:273043/1‑251 GGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCT‑TTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAACGTTCTCTGGACGATATCTCTTCAGGCTCTATTATTCTTCTGGATATGATGGAAGCGGATAAAAAGCTTATCCATTA > 1:594353/1‑251 agatgtgtataaggagcagGAATGCTTAATCAGGTAGCTGGCAAGCT‑TTTGCGTAAAGTAGCATTCGCCCCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATG‑TCGCGGTACGGGTAATCTTCAGGCTCTATTATTCTTCTGGATATGATGGAAGCGGATAAAAAGCTTATCCATTATTGGCAGGATACTTTGAGCA < 2:416540/232‑1 GTTATATGGGTAGTTACCTGAATGCGTAGTGCGGTAGCATGCAAGCTGTTTGCG‑AAAGGAGCAATCACCGCGCAGGACGCCTTGCAACCCATTGGCAACGCGTACTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGTCCAGTTTTCAATG‑TCGCGGTACGGGTAATCTTCATGCTCTGTTATTGTTCTGGATATGATGGAAGCGGATAAAAAGCTTATCCATGATTAGCAGGTTAGTTTGAGCA < 2:273120/251‑1 TTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCT‑TTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAACGTTCTCTGGACGATATCTCTTCAGGCTCTATTATTCTTCTGGATATGATGGAAGCGGATAAAAAGCTTATCCATTATTGGCAGGATACTTTGAGCA < 2:594465/251‑1 GGTAGCTGGCAAGCT‑TTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATG‑TCGCGGTACGGGTAATCTTCAGGCTCTATTATTCTTCTGGATATGATGGAAGCGGATAAAAAGCTTATCCATTATTGGCAGGATACTTTGAGCA < 2:452953/219‑1 AGCT‑TTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATG‑TCGCGGTACGGGTAATCTTCAGGCTCTATTATTCTTCTGGATATGATGGAAGCGGATAAAAAGCTTATCCATTATTGGCAGGATACTTTGAGCAGGAAAAACAACAATATCAAAATATctggctcttatacaaatct > 1:416443/1‑232 AGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATG‑TCGCGGTACGGGTAATCTTCAGGCTCTATTATTCTTCTGGATATGATGGAAGCGGATAAAAAGCTTATCCATTATTGGCAGGATACTTTGAGCAGGAAAAACAACAATATCAAAATAT > 1:452851/1‑219 TCTTCAGGCTCTATTATTCTTCTGGATATGATGGAAGCGGATAAAAAGCTTATCCATTATTGGCAGGATACTTTGAGCAGGAAAAACAACAATATCAAAATATTGTTGCTAAATACGCCTGAAGACTACCCGTACCGCGACATTGAAAACTGGCCTCATATCAACGGCGTTTTTTATTCCATGGAGGATCAAGAACGTGTAGTCAATGGGTTGCAAGGCGTCCTGCGCGGCGAATGCGACTTTACGCAAAA > 2:919295/1‑251 CTTCAGGCTCTATTATTCTTCTGGATATGATGGAAGCGGATAAAAAGCTTATCCATTATTGGCAGGATACTTTGAGCAGGAAAAACAACAATATCAAAATATTGTTGCTAAATACGCCTGAAGATTACCCGTACCGCGACATTGAAAACTGGCCTCATATCAAC < 1:194339/164‑1 AGGCACTATTATTCTTCTGGATATGATGGAAGCGGATAAAAAGCTTATCCATTATTGGCAGGATACTTTGAGCAGGAAAAACAACAATATCAAAATATTGTTGCTAAATACGCCTGAAGAGTACCCGTACCGGGAAATTGAAAACTGGCCTCATA > 2:979841/1‑155 TCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCT‑TTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATG‑TCGCGGTACGGGTAATCTTCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1102673‑1102930‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcaggcTCTATTATTCTTCTGGATATGATGGAAGCGGATAAAAAGCTTATCCATTATTGGCAGGATACTTTGAGCAGGAAAAACAACAATATCAAAATATTGTTGCTAAATACGCCTGAAGATTACCCGTACCGCGACATTGAAAACTGGCCTCATATCAACGGCGTTTTTTATTCCATGGAGGATCAAGAACGTGTTGTCAATGGGTTGCAAGGCGTCCTGCGCGGCGAATGCTACTTTACGCAAAA < NC_000913/1103037‑1102796 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |