Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908 258683 776 77 [0] [0] 77 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)76 (0.770) 54/454 0.5 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

TCATCATCTGCTGACGGTAAATTATTAGAGATCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCAC  >  NC_000913/257661‑258144
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                             
tcatcaTCTGCTGACGGTAAATTATTAGAGATCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtg                                                                                                                                                                                                                                           >  1:817608‑M1/1‑247 (MQ=255)
tcatcaTCTGCTGACGGTAAATTATTAGAGATCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTCGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGTAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGAGagtg                                                                                                                                                                                                                                           >  2:156090‑M1/1‑247 (MQ=255)
tcatcaTCTGCTGACGGTAAATTATTAGAGAACCCATTTAACCCGGTGTATAGGAATGTTGACAAAGGTCTTCAGGAAATCACCGACTGGAACGAAAAACGCTAGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGAAAAACAGTTGCATCAGAACAGGAGATAGCAATGACGTTACAGAGTGGACACCCGAAGAGAAGATTGATAAAAAAATTTACCGCACTAGGCACGTATAGTCGTGAAGGAAagtt                                                                                                                                                                                                                                           >  2:691522‑M1/1‑247 (MQ=255)
           tgACGGTAAATTATTAGGGATCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatc                                                                                                                                                                                                                                <  2:1068086‑M1/251‑16 (MQ=255)
           taagcgacagttattagagtccccatTTCACCCGGTGTATCGGAAGTTTGACAAAGGTCTTCAGGAAATCCCCGACTGGATCGACAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGCGATAGCAATGTCGTTACCGAGTGGACCCCCGAAGAGCAGATTAATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatc                                                                                                                                                                                                                                <  2:755404‑M1/241‑16 (MQ=255)
            gACGGTAAATTATTAGAGATCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTAACGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcg                                                                                                                                                                                                                               >  2:136138‑M1/1‑235 (MQ=255)
              cGGTAAATTATTAGAGATCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgat                                                                                                                                                                                                                             >  1:121590‑M1/1‑233 (MQ=255)
                 tAAATTATGAGAGATCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAAAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattct                                                                                                                                                                                                                          <  1:156043‑M1/251‑22 (MQ=255)
                   gattaataGAGAGCCCATGTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTATGTTAAAAATTTGCTAAATGTTGCCAATTTGGTAAAACAGTTGCATCGCAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAggtgcaaagataatcgattcttt                                                                                                                                                                                                                        <  1:441285‑M1/250‑24 (MQ=255)
                      tattaGAGATCCCATTTAACCCGGTGTATCGGAATTTTGACAAATGCCTTCAGGAAATCACCTACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCACTTCGGTAAAACAGTTGCATCACAATAGGAGATAGCAATGACGTTACCGAGTGGACAACCGAAGAGCAGATTGATCAAAAAATTTAATGCACTAGGCCCGTATATTCGTGAAGGTAcgtgcagagctaattgattctttttc                                                                                                                                                                                                                     >  2:121150‑M1/1‑225 (MQ=255)
                        tgagagatCCCATTTAACGCGGTGTATCGGAATTTTGACAAAGGTCTGCAGGAAATCACCGACTGGATCGAAAAACGCCTGGGTTAAAAATTTGCTAAAGTTTGCCAATTTGGTCAAACAGTTGAATCACAACAGGAGATAGTAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATGCGTGAAGGTAagtgcaaagataatcgattctttttcga                                                                                                                                                                                                                   <  2:514125‑M1/249‑29 (MQ=255)
                             gaTCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtc                                                                                                                                                                                                              <  1:897854‑M1/251‑34 (MQ=255)
                               tCCCATTTAAACCGGTGTATCGGAATTTTGACAAAGGTCTTAAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAAAAGGAGATAGCAATGACGTTCACGAGTGGACAACCGAAGAGCAGATTGATCAAAAAATGTACCGCACTAGGCCAGCCTATTCGAGAGGGTAagtgcaaagataatacattctttttcgcttggatg                                                                                                                                                                                                            >  2:646491‑M1/1‑216 (MQ=255)
                                         cccTGTGTATCGGAATTTTGACAAAAGTCTTCAGGAAATCACCGACTTGATCTAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTATGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg                                                                                                                                                                                                  <  1:646370‑M1/251‑46 (MQ=255)
                                         cccAGTGTATCGGCATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCCAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg                                                                                                                                                                                                  <  2:759738‑M1/251‑46 (MQ=255)
                                            ggTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGTCAATTTGGTAAAACAGTTGAATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTTTATTCGTGAAGGTAaggtcaaagataaccgattctttttcgattgtctggcggtatgcgtca                                                                                                                                                                                               >  1:618210‑M1/1‑203 (MQ=255)
                                             gtgtATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAAAAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaaga                                                                                                                                                                                                                                     >  1:51607‑M1/1‑202 (MQ=255)
                                             gtgtATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCAAATTTGGTAAAACAGTTGCATCGCAACAGGAGATAGCAATGTCGTTATCGAGTGGACACCCGATGAGCAGATTGAACAAAAAATTTACCGCCTTAGGCCCGTATATTCGTGAAGGCTagtgcaaagataatcgtttctttttcgatattctggctgtatgcgtc                                                                                                                                                                                                >  2:441376‑M1/1‑202 (MQ=255)
                                             gtgtATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATGTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGAATATTCGTGAAGGTAagtgcaaagataattgattctttttcgattgtctggctgtatgcgtcca                                                                                                                                                                                              >  1:973746‑M1/1‑202 (MQ=255)
                                             gtgtATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGATTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGGAAAAAAGCTGCATCACAATAGGAGATAGCAATGACGTTACCGAGAGGACACCCGAAGAGCAGATTGATCAAAAAATTAAACGCACTAGGCCCGTATATTCGTGAAGGTAagggcaaagataaacgattctgtttcgagtgtctggatgctggtgtgta                                                                                                                                                                                              >  1:755274‑M1/1‑202 (MQ=255)
                                             gtgtATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCCACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCAAAACAGGAGATAGCAATGAAGTTACCGAGTGGACACCCGAAGAGCAGATAGATCAAACAATTTACCGCACTAGGCTCGTATATTCGTGAAGGTAagtgcaaggataagcgattctttttagattgtctggctgtaggcgtcaa                                                                                                                                                                                              >  2:1025046‑M1/1‑202 (MQ=255)
                                             gtgtATCGGAATTTTGACAAAGGTCTCCAGGAAATCACCGACTGGATCGAAAAACGCCTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCACGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgagtgtctggctgtatgcgtaaa                                                                                                                                                                                              >  1:514012‑M1/1‑202 (MQ=255)
                                                tATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgt                                                                                                                                                                                           >  1:565453‑M1/1‑199 (MQ=255)
                                                    ggAATTTTGACAAAGGTCTTCAGGAAATCACCAACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaa                                                                                                                                                                                       <  2:576663‑M1/251‑57 (MQ=255)
                                                      aaTTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATAAAAAAATTTACCGCACTAGGCCCGTATAATCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacc                                                                                                                                                                                     >  2:444925‑M1/1‑193 (MQ=255)
                                                          ttGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttgttcgattgtctggctgtatgcgtcaacgtgaaaccggca                                                                                                                                                                                 >  1:576547‑M1/1‑189 (MQ=255)
                                                           tGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcac                                                                                                                                                                                >  2:573400‑M1/1‑188 (MQ=255)
                                                                    tCTTCAGGAAGTCACCTACTGGATCGAAAAACGCTTGTGTGAAAAAGTGGCGAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaatataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgc                                                                                                                                                                       <  1:870176‑M1/251‑73 (MQ=255)
                                                                       tCAGGAAATCACCGACTGGATCGAAAAATGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATAACAACAGGAGATAGCAATGTCGTTAACGAGTGGACACTCTACGAGCAGACTGATCAAAAAATCTACCGCACTAGGCCCGTAACTTCGAGAAGGTAagtgcaaagataatcgattcttttctgattgtatggctgtatgggccaaagtgcaaccggcacccgaatggagtg                                                                                                                                                                    >  1:118727‑M1/1‑176 (MQ=255)
                                                                                   cGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggct                                                                                                                                                        >  1:97525‑M1/1‑164 (MQ=255)
                                                                                        ggATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgc                                                                                                                                                                                                                                          <  1:569896‑M1/164‑6 (MQ=255)
                                                                                          aTCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacttgaaaccggcaccggaagtgcgtgaattctggggctggtggat                                                                                                                                                 >  1:657615‑M1/1‑157 (MQ=255)
                                                                                            cGAAAAACTCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACGACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttt                                                                                                                                                                                                                        <  1:672523‑M1/178‑24 (MQ=255)
                                                                                                  aCGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgggtctggtggatggagcggg                                                                                                                                         >  2:1103575‑M1/1‑149 (MQ=255)
                                                                                                      ttGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagcgggaagc                                                                                                                                     >  2:595414‑M1/1‑145 (MQ=255)
                                                                                                                aaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgat                                                                                                                                                                                                                  >  2:570012‑M1/1‑135 (MQ=255)
                                                                                                                    tGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATAAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagatcatcgattctttttcgattgtccggttgtttgcgtc                                                                                                                                                                                                >  2:672641‑M1/1‑131 (MQ=255)
                                                                                                                      cTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggagggagctggaagcgcatgaatcccgactt                                                                                                                     >  1:527124‑M1/1‑129 (MQ=255)
                                                                                                                      cTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATAGTCGTGAAGGTAagtgcaaagataatcgatactttttcgattgtctggctgcatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggttggtggatggtgttggaagtggtggaatccttttgt                                                                                                                     >  1:673030‑M1/1‑129 (MQ=255)
                                                                                                                                                gtttcgtagacacgggtgcaagcaataacattaccgagtggACACCCGAAGAGTAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattctctggctgtgtgcttcaacgtgaaaccggcaccggaagtgcgtgaattctgggggtggtcgatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgtt                                                                                           <  2:817754‑M1/231‑149 (MQ=255)
                                                                                                                                                gTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgtt                                                                                           <  1:1103408‑M1/251‑149 (MQ=255)
                                                                                                                                                agtgcATCACAACAGGGGATAGCAATGACGTTACAGAGTAGACACCCGAAGAGCAAGTTGATCGAAAAATTTACCGCACTCGGGCCGTATATTCGTGTAGGTAagtgcaaagctattctattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgtt                                                                                           <  2:527237‑M1/249‑149 (MQ=255)
                                                                                                                                                        acaacaGGAAATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaag                                                                                   <  2:565569‑M1/251‑157 (MQ=255)
                                                                                                                                                         caacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatc                                                                                                                                                                                                                                <  2:325944‑M1/109‑16 (MQ=255)
                                                                                                                                                              ggAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTTGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatc                                                                                                                            <  1:649565‑M1/204‑116 (MQ=255)
                                                                                                                                                                   tAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactgg                                                                        >  1:14523‑M1/1‑84 (MQ=255)
                                                                                                                                                                      cAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccggtttacctacagttaccagtttggtctgttcgataaagcaggcgactggaag                                                                     >  2:909790‑M1/1‑81 (MQ=255)
                                                                                                                                                                       aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAAGTTACCGCACTAGGCCCGTATAGTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaaga                                                                    <  1:444823‑M1/251‑172 (MQ=255)
                                                                                                                                                                        aTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagag                                                                   <  2:682596‑M1/251‑173 (MQ=255)
                                                                                                                                                                            cGTTACCGAGTGGACACCCGAGGAGCAGATTGATCAAAAAATTTACCGCTCTAGGCCCGTATATTCGTGGAGGTAagtgcaaaaataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattct                                                                                                                                                              <  2:419617‑M1/156‑82 (MQ=255)
                                                                                                                                                                            aatggccggggggtcacccgaaggccagattGATCAAAAAATTTCCCGAGCTAGGCCCGTATATTCGGGAAGGTAagtgcaaagataagcgatgctttttcgatggtctggctgtatgcgtcaacgtgaaaccggaaccggaagggcgtggattcggggggtggtggatgaagctgggagggcaggaatcccgttttagctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgtt                                                               <  1:1064199‑M1/237‑177 (MQ=255)
                                                                                                                                                                                aCCGCGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacag                                                                                                             <  2:787900‑M1/201‑131 (MQ=255)
                                                                                                                                                                                 ccGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatctcgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagggttccggt                                                          >  2:429795‑M1/1‑70 (MQ=255)
                                                                                                                                                                                 ccGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggctactggaagcgtgttccggc                                                          >  1:377371‑M1/1‑70 (MQ=255)
                                                                                                                                                                                 ccGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggt                                                          >  2:370768‑M1/1‑70 (MQ=255)
                                                                                                                                                                                 ccGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctg                                                                                                                                                                                                        >  1:325876‑M1/1‑70 (MQ=255)
                                                                                                                                                                                     gTGGACACCCGAAGGTCAGATTAATCAAAAAATTTACCGACCAAGGCCCGTATATTCGGAAAGGTAagtgaaaagataatcgtttcttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaag                                                      <  1:136091‑M1/251‑186 (MQ=255)
                                                                                                                                                                                      tGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattgtggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtt                                                                                                    >  2:649686‑M1/1‑65 (MQ=255)
                                                                                                                                                                                          cacCCTAAGTGCAGATTGATCAAAAAATTTACCCCACCTTGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgcttctttttctattgtctggctgtttgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtt                                                                                                           <  1:481138‑M1/193‑133 (MQ=255)
                                                                                                                                                                                           acCCTAAGGGCAGATTGATCAAAAAATTTTCCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatccattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcgccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacact                                                <  2:97566‑M1/251‑192 (MQ=255)
                                                                                                                                                                                           acCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacact                                                <  1:370692‑M1/251‑192 (MQ=255)
                                                                                                                                                                                             ccGAAGAGCAAATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactga                                              <  1:595295‑M1/251‑194 (MQ=255)
                                                                                                                                                                                             ccGAAGAGAAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactga                                              <  2:74851‑M1/251‑194 (MQ=255)
                                                                                                                                                                                               gAAGGGCAGATTGATCAAAAAATTTACCGCCCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactgaag                                            <  1:573284‑M1/251‑196 (MQ=255)
                                                                                                                                                                                               gAAGAGCTGATTGATAGACAAATTTACCGAACTAATCCCGTATATTCGTGAATGTAagtgtaaagataatcgattctttttcgattgtctggctggatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgggactggtggatggagctggagacgcaggaatccctttttacctacagttaccagtttggtctgttcgatatagcatgcgactggaagagtgttccggtaaaagacacttaag                                            <  1:781181‑M1/251‑196 (MQ=255)
                                                                                                                                                                                               gAAAAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaaggtaagcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactgaag                                            <  2:14553‑M1/251‑196 (MQ=255)
                                                                                                                                                                                                 agagCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgcatggcagagtgttccggtaaaagacactgacgtg                                          >  2:184024‑M1/1‑54 (MQ=255)
                                                                                                                                                                                                    gacaatttaTCACAAAATTTCCCGCCCTTTGCCCGTATATTCTTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgcaaccggcaccggaagtgcgtgaattctggggctggttgatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactgaagtggtt                                       <  2:64201‑M1/247‑201 (MQ=255)
                                                                                                                                                                                                        aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataa                                                                                     >  1:787757‑M1/1‑47 (MQ=255)
                                                                                                                                                                                                          tGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactgaagtggttgaacga                                 >  1:782842‑M1/1‑45 (MQ=255)
                                                                                                                                                                                                                   aaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactgaagtggttgaacgactggagcac                        <  1:429704‑M1/251‑216 (MQ=255)
                                                                                                                                                                                                                         ccGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagaaactgaagtggttgaacgactggaggacaccctg                  >  1:64160‑M1/1‑30 (MQ=255)
                                                                                                                                                                                                                            cACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaaatctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactga                                              <  1:398915‑M1/220‑194 (MQ=255)
                                                                                                                                                                                                                                       tataTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactgaagtggttgaacgactggagcacaccctgcgtgagtttcacga    <  1:341087‑M1/251‑236 (MQ=255)
                                                                                                                                                                                                                                        atatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactgaagtggttgaacgactggagaacaccctgcgtgagtttcccgag   >  2:941339‑M1/1‑15 (MQ=255)
                                                                                                                                                                                                                                         tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctttatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactgaagtggttgaacgactggagcacaccctgcgtgagtttcacgaga  <  1:691397‑M1/251‑238 (MQ=255)
                                                                                                                                                                                                                                                    gTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactgaagtggttgaacgactggagcacac                      >  2:398996‑M1/1‑3 (MQ=255)
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                             
TCATCATCTGCTGACGGTAAATTATTAGAGATCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCAC  >  NC_000913/257661‑258144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.