New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1259918	46 (1.270)	6 (0.170)	6/246	3.7	12.6%	coding (886/1680 nt)	dauA	C4‑dicarboxylic acid transporter
	?	NC_000913	= 1259933	40 (1.170)					coding (871/1680 nt)	dauA	C4‑dicarboxylic acid transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGTTAGCGGCAGAACGCGCGATGGCAGCTGTAGCGGTAATACCACCAAAGAACGGAGCGATAATATTCCCCAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGGCAGCAGTGTGCGAATAGAATCCCAGGTTAGCGTGAATTCTGAATTAGGCAGATCCCACGGCAGCACCAGTTGCGGCAGCAGTTGCGGAATACC  >  NC_000913/1259777‑1260059                                                                                                                                              |                                                                                                                                              cGTTAGCGGCAGAACGCGCGATGGCAGCTGTAGCGGTAATACCACCAAAGAACGGAGCGATAATATTCCCCAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCgcagagcaga                                                                                                                                        <  6:96815/149‑1 (MQ=255)         gCAGAACGCGCGATGGCAGCTGTAGCGGTAATGCCACCAAAGAACGGAGCGATAATATTCCCCAGTCCCTGTCCACCCTGTTAGCTGTTCGCCTGGTGTTTCGTCCCGGTCATACCATACAGCGCCACGGCGCAGAGTAGAGATTCGAt                                                                                                                                >  1:173019/1‑149 (MQ=255)                 cgcgATGGCAGCTGTAGCGGTAATACCACCAAAGAACGGAGCGATAATATTCCCCAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGTAGAGATTCGATTGCGcc                                                                                                                          <  4:46650/147‑1 (MQ=255)                 cgcgATGGCAGCTGTAGCGGTAATACCACCAAAGAACGGAGCGATAATATTCCCCAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGTAGAGATTCGATTGCGcc                                                                                                                          >  3:46650/1‑147 (MQ=255)                                   ggTAATACCACCAATGAACGGAGCGATATTATTCCCCAGTCCCTGTCCAACGAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCTTCCAGCACAACGGCGCAGAGTAGAGATTCGATTGGGCCGAGCATTGCCATTGAGAATg                                                                                                      <  2:173019/149‑1 (MQ=255)                                           caccaAAGAACGGAGCGATAATATTCCCCAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGCAGAGAt                                                                                                                                     <  1:151095/110‑1 (MQ=255)                                           caccaAAGAACGGAGCGATAATATTCCCCAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGCAGAGAt                                                                                                                                     >  2:151095/1‑110 (MQ=255)                                           caccaAAGAACGGAGCGATAATATTCCCCAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCAtt                                                                                                             >  8:131991/1‑134 (MQ=255)                                           caccaAAGAACGGAGCGATAATATTCCCCAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCAtt                                                                                                             <  7:131991/134‑1 (MQ=255)                                            accaAAGAACGGAGCGATAATATTCCCCAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGCAGAGAtt                                                                                                                                    >  8:94990/1‑110 (MQ=255)                                            accaAAGAACGGAGCGATAATATTCCCCAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGCAGAGAtt                                                                                                                                    <  7:94990/110‑1 (MQ=255)                                                aaGAACGGAGCGATAATATTCCCCAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGGcagcag                                                                                         >  4:2064/1‑149 (MQ=255)                                                          cGATAATATTCCCCAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGGCAGCAGTGTGCGAATa                                                                               <  2:52385/149‑1 (MQ=255)                                                            ataataTTCCCCAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCTTCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGGCAGCAGTGTGCGAATAg                                                                              >  5:103448/1‑148 (MQ=255)                                                                     cccAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCTTCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGGCAGCAGTGTGCGAATAGAATCCCAgg                                                                     <  6:103448/148‑1 (MQ=255)                                                                     cccAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGCAGAGATTCGa                                                                                                                                 <  8:40696/88‑1 (MQ=255)                                                                       cAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCgcagagcag                                                                                                                                         <  7:16296/78‑1 (MQ=255)                                                                       cAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCgcagagcag                                                                                                                                         >  8:16296/1‑78 (MQ=255)                                                                                     ccAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCgca                                                                                                 <  5:28321/104‑1 (MQ=255)                                                                                     ccAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCgca                                                                                                 >  6:28321/1‑104 (MQ=255)                                                                                     ccAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGgcagca                                                                                          <  8:137038/111‑1 (MQ=255)                                                                                     ccAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGgcagca                                                                                          >  7:137038/1‑111 (MQ=255)                                                                                         ttCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGCAGAGATTCGa                                                                                                                                 >  5:25888/1‑68 (MQ=255)                                                                                         ttCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGCAGAGATTCGa                                                                                                                                 <  6:25888/68‑1 (MQ=255)                                                                                         ttCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGGCAGCAGTGTGCGAATAGAATCCCAGGTTAGCGTGAATTCTGAATTAg                                                >  1:91334/1‑149 (MQ=255)                                                                                                    ccTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGGCAGCAGTGTGCGAATAGAATCCCAGGTTAGc                                                                <  8:123152/122‑1 (MQ=255)                                                                                                    ccTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGGCAGCAGTGTGCGAATAGAATCCCAGGTTAGCGTGAATTCTGAATTAGGCAGATCCCAc                                     >  4:72489/1‑149 (MQ=255)                                                                                                    ccTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGGCAGCAGTGTGCGAATAGAATCCCAGGGTAGc                                                                >  7:123152/1‑122 (MQ=255)                                                                                                          gtTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCgcaggc                                                                                              <  8:33555/86‑1 (MQ=255)                                                                                                           tttCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGGCAGCAGTGTGCGAATAGAATCCCAGGTTAGCGTGAATTCTGAATTAGGCAGATCCCACGgcagca                              >  7:40483/1‑149 (MQ=255)                                                                                                                    ggTCATACCATCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGGCAGCAGTGTGCGAATAGAATCCCAGGTTAGCGTGAATTCTGAATTAGGCAGATCCCACGGCAGCACCAGTTGCg                     >  8:18616/1‑149 (MQ=255)                                                                                                                      tCATACCATCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCgcagg                                                                                               >  1:73221/1‑73 (MQ=255)                                                                                                                      tCATACCATCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCgcagg                                                                                               <  2:73221/73‑1 (MQ=255)                                                                                                                        aTACCATCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGGCAGCAGTGTGCGAATAGAATCCCAGGTTAGCGTGAATTCTGAATTAGGCAGATCCCACGGCAGCACCAGTTGCGgca                  <  2:91334/148‑1 (MQ=255)                                                                                                                           ccATCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGGCAGCAGTGTGCGAATAGAATCCCAGGTTAGCGTGAATTCTGAATTAGGCAGATCCCACGGCAGCACCAGTTGCGgcagca               <  8:40483/148‑1 (MQ=255)                                                                                                                            cATCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCgca                                                                                                 <  6:46051/65‑1 (MQ=255)                                                                                                                              tCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGACATTGAGAATGCCGCAGGCAGCAGTGTGCGAATAGAATCCCAGGTTAGCGTGAATTCTGAATTAGGCAGATCCCACGGCAGCACCAGTTGCGGCAGCAGTTg           >  8:125272/1‑149 (MQ=255)                                                                                                                               ccAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGGCAGCAGTGTGCGAATAGAATCCCAGGTTAGCGTGAATTCTGAATTAGGCAGATCCCACGGCAGCACCAGTTGCGGCAGCAGTTGc          >  4:86700/1‑149 (MQ=255)                                                                                                                                cAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCAGTGAGAATGCCGCAGGCAGCAGTGTGCGAATAGAATCCCAGGTTAGCGTGAATTCTGAATTAGGCAGATCCCACGGCAGCACCAGTTGCGGCAGCAGTTGc          <  3:2064/148‑1 (MQ=255)                                                                                                                                  gCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGGCAGCAGTGTGCGAATAGACTCCCAGGTTAGCGTGAATTCTGAATTAGGCAGATCCCACGGCAGCACCAGTTGCGGCAGCAGTTGCgg        >  7:109180/1‑148 (MQ=255)                                                                                                                                  gCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGGCAGCAGTGTGCGAATAGAATCCCAGGTTAGCGTGAATTCTGAATTAGGCAGATCCCACGGCAGCACCAGt                         <  4:119430/131‑1 (MQ=255)                                                                                                                                  gCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGGCAGCAGTGTGCGAATAGAATCCCAGGTTAGCGTGAATTCTGAATTAGGCAGATCCCACGGCAGCACCAGt                         >  3:119430/1‑131 (MQ=255)                                                                                                                                      cacGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGGCAGCAGTGTGCGAATAGAATCCCAGGTTAGCGTGAATTCTGAATTAGGCAGATCCCACGGCAGCACCAGTTGCGgcagc                <  7:73807/136‑1 (MQ=255)                                                                                                                                      cacGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGGCAGCAGTGTGCGAATAGAATCCCAGGTTAGCGTGAATTCTGAATTAGGCAGATCCCACGGCAGCACCAGTTGCGgcagc                >  8:73807/1‑136 (MQ=255)                                                                                                                                       acGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGGCAGCAGTGTGCGAATAGAATCCCAGGTTAGCGTGAATTCTGAATTAGGCAGATCCCACGGCAGCACCAGTTGCGGCAGCAGTTGCGGAATAcc  >  2:1876/1‑149 (MQ=255)                                                                                                                                       acGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGGCAGCAGTGTGCGAATAGAATCCCAGGTTAGCGTGAATTCTGAATTAGGCAGATCCCACGGCAGCACCAGTTGCGGCAGCAGTTGCGGAATAcc  <  3:86700/149‑1 (MQ=255)                                                                                                                                              |                                                                                                                                              CGTTAGCGGCAGAACGCGCGATGGCAGCTGTAGCGGTAATACCACCAAAGAACGGAGCGATAATATTCCCCAGTCCCTGTCCAACCAGTTCGCTGTTCGCCTTGTGTTTCGTCCCGGTCATACCATCCAGCACCACGGCGCAGAGCAGAGATTCGATTGCGCCGAGCATTGCCATTGAGAATGCCGCAGGCAGCAGTGTGCGAATAGAATCCCAGGTTAGCGTGAATTCTGAATTAGGCAGATCCCACGGCAGCACCAGTTGCGGCAGCAGTTGCGGAATACC  >  NC_000913/1259777‑1260059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.