New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3518167 =	32 (0.880)	5 (0.150)	5/246	4.1	14.0%	coding (320/1089 nt)	aroB	3‑dehydroquinate synthase
	?	NC_000913	3518199 =	31 (0.900)					coding (288/1089 nt)	aroB	3‑dehydroquinate synthase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGTTTTGCCGCCAACGGAGGAATCGACCTGCGACAGTAACGTCGTCGGGACTTGAATGAAACGGACACCGCGCTGATAACTCGCCGCCGCGAAGCCGGTCAGATCGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATACTGCTCGCCGTCAGGGAGGATAACGCTATCGACGTTAACACCCGCCTGTTCAAGTACGCCGCGGACCTTATCGAGATACAGA  >  NC_000913/3518058‑3518346                                                                                                                                              |                                                                                                                                                    aGTTTTGCCGCCAACGGAGGAATCGACCTGCGACAGTAACGTCGTCGGGACTTGAATGAAACGGACACCGCGCTGATAACTCGCCGCCGCGAAGCCGGTCAGATCGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGAc                                                                                                                                              <  6:137346/149‑1 (MQ=255)     ttGCCGCCAACGGAGGAATCGACCTGCGACAGTAACGTCGTCGGGACTTGAATGAAACGGACACCGCGCTGATAACTCGCCGCCGCGAAGCCGGTCAGATCGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCAt                                                                                                                                           <  4:55203/148‑1 (MQ=255)             aaCGGAGGAATCGACCTGCGACAGTAACGTCGTCGGGACTTGAATGAAACGGACACCGCGCTGATAACTCGCCGCCGCGAAGCCGGTCAGATCGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGttttt                                                                                                                                  <  4:138931/149‑1 (MQ=255)             aaCGGAGGAATCGACCTGCGACAGTAACGTCGTCGGGACTTGAATGAAACGGACACCGCGCTGATAACTCGCCGCCGCGAAGCCGGTCAGATCGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGttttt                                                                                                                                  <  4:136736/149‑1 (MQ=255)                      aTCGACCTGCGACAGTAACGTCGTCGGGACTTGAATGAAACGGACACCGCGCTGATAACTCGCCGCCGCGAAGCCGGTCAGATCGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACg                                                                                                                         <  5:133995/149‑1 (MQ=255)                                   aGTAACGTCGTCGGGACTTGAATGAAACGGACACCGCGCTGATAACTCGCCGCCGCGAAGCCGGTCAGATCGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACgg                                                                                                             >  8:123937/1‑148 (MQ=255)                                            gtcgGGACTTGAATGAAACGGACACCGCGCTGATAACTCGCCGCCGCGAAGCCGGTCAGATCGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTa                                                                                                    >  7:69571/1‑148 (MQ=255)                                                    ttGAATGAAACGGACACCGCGCTGATAACTCGCCGCCGCGAAGCCGGTCAGATCGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGc                                                                                           >  4:9689/1‑149 (MQ=255)                                                            aaCGGACACCGCGCTGATAACTCGCCGCCGCGAAGCCGGTCAGATCGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATAc                                                                                   >  3:144676/1‑149 (MQ=255)                                                                   acCGCGCTGATAACTCGCCGCCGCGAAGCCGGTCAGATCGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATACTGCTCGc                                                                            >  2:168748/1‑149 (MQ=255)                                                                      gcgcTGATAACTCGCCGCCGCGAAGCCGGTCAGATCGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTtata                                                                                    >  8:35815/1‑138 (MQ=255)                                                                      gcgcTGATAACTCGCCGCCGCGAAGCCGGTCAGATCGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTtata                                                                                    <  7:35815/138‑1 (MQ=255)                                                                      gcgcTGATAACTCGCCGCCGCGAAGCCGGTCAGATCGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATACTGCTCGCCGt                                                                         >  4:77548/1‑149 (MQ=255)                                                                                 tCGCCGCCGCGAAGCCGGTCAGATCGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATACTGCTCGCCGTCAGGGAGGAt                                                               >  6:70655/1‑148 (MQ=255)                                                                                           gAAGCCGGTCAGATCGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGa                                                                                                       >  4:128239/1‑98 (MQ=255)                                                                                           gAAGCCGGTCAGATCGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGa                                                                                                       <  3:128239/98‑1 (MQ=255)                                                                                               ccGGTCAGATCGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATACTGCTCGCCGTCAGGGAGGATAACGCTATCGACGtt                                                <  3:9689/149‑1 (MQ=255)                                                                                                     aGATCGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATACTGCTCCCCGTCAGGGAGGATAACGCTATCGACGATAACAcc                                          >  7:145867/1‑149 (MQ=255)                                                                                                      gATCGCCCACTACGCCGCCGCCAAGAGAGACAAGCGTAGTATCGCGACCATGAGGTTTTTGTAACAACGCAGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATACTGCTCGCCGTCAGGGAGGATAACGCTATCGACGTTAACAccc                                         <  8:145867/149‑1 (MQ=255)                                                                                                        tCGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATACTGCTCGCCGTCAGGGAGGATAACGCTATCGACGTTAACAccc                                         >  4:79289/1‑147 (MQ=255)                                                                                                        tCGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATACTGCTCGCCGTCAGGGAGGATAACGCTATCGACGTTAACAccc                                         <  3:79289/147‑1 (MQ=255)                                                                                                         cGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATACTGCTCGCCGTCAGGGAGGATAACGCTATCg                                                     <  8:105658/134‑1 (MQ=255)                                                                                                         cGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATACTGCTCGCCGTCAGGGAGGATAACGCTATCg                                                     >  7:105658/1‑134 (MQ=255)                                                                                                             cACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATACTGCTCGCCGTCAGGGAGGATAACGCTATCGACGTTAACACCCGCCTGtt                                  <  5:70655/149‑1 (MQ=255)                                                                                                              aCTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATACTGCTCGCCGTCAGGGAGGATAACGCTATCGACGTTAACACCCGCCTGTTc                                 <  8:69571/149‑1 (MQ=255)                                                                                                              aCTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATACTGCTCGCCGTCAGGGAGGATAACGCTATCGACGTTAACACCCGCCTGTTc                                 <  3:77548/149‑1 (MQ=255)                                                                                                                      gccgccAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATACTGCTCGCCGTCAGGGAGGATAACGCTATCGACGTTAACACCCGCCTGTTCaa                               >  7:133211/1‑143 (MQ=255)                                                                                                                      gccgccAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATACTGCTCGCCGTCAGGGAGGATAACGCTATCGACGTTAACACCCGCCTGTTCaa                               <  8:133211/143‑1 (MQ=255)                                                                                                                                gcCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATACTGCTCGCCGTCAGGGAGGATAACGCTATCGACGTTAACACCCGCCTGTTCAAGTACGCCGCGGACCt                >  1:180361/1‑148 (MQ=255)                                                                                                                                  caccaGCGTAGTATCGCCACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATACTGCTCGCCGTCAGGGAGGATAACGCTATCGACGTTAACACCCGCCTGTTCAAGTACGCCGCGGACCTTAt             >  7:135239/1‑149 (MQ=255)                                                                                                                                   accaGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATACTGCTCGCCGTCAGGGAGGATAACGCTATCGACGTTAACACCCGCCTGTTCAAGTACGCCGCGGACCTTATc            >  2:184899/1‑149 (MQ=255)                                                                                                                                          tagtaTCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATACTGCTCGCCGTCAGGGAGGATAACGCTATCGACGTTAACACCCGCCTGTTCAAGTACGCCGCGGACCTTATCGAGATAc     <  1:184899/149‑1 (MQ=255)                                                                                                                                            gtaTCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATACTGCTCGCCGTCAGGGAGGATAACGCTATCGACGTTAACACCCGCCTGTTCAAGTACGCCGCGGACCTTATCGAGATACa    <  1:168748/148‑1 (MQ=255)                                                                                                                                             taTCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATACTGCTCGCCGTCAGGGAGGATAACGCTATCGACGTTAACACCCGCCTGTTCAAGTACGCCGCGGACCTTATCGAGATACaga  <  7:123937/149‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                    AGTTTTGCCGCCAACGGAGGAATCGACCTGCGACAGTAACGTCGTCGGGACTTGAATGAAACGGACACCGCGCTGATAACTCGCCGCCGCGAAGCCGGTCAGATCGCCCACTACGCCGCCGCCAAGCGCCACCAGCGTAGTATCGCGACCATGCGGTTTTTGTAACAACGCCGTAAAGACGGTATCGAGTACAGCCAGGCTTTTATACTGCTCGCCGTCAGGGAGGATAACGCTATCGACGTTAACACCCGCCTGTTCAAGTACGCCGCGGACCTTATCGAGATACAGA  >  NC_000913/3518058‑3518346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.