New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1543030 =	45 (1.080)	6 (0.150)	5/244	4.2	13.2%	coding (1031/1389 nt)	narU	nitrate/nitrite transporter
	?	NC_000913	1543053 =	36 (0.910)					coding (1008/1389 nt)	narU	nitrate/nitrite transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTTTCATCTTTACCCGATAAATGGTTATCTGGCGAAAGATGACGGCGATCATCTGGAAAGTAGAACCACTTCCCAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATAAAGTTGATCAACGTCACCCGCACGCCGCCGAACTTATCGGAAATAGCACCACCAACCGACCGCGCGATGGCACCGATAAATGGGC  >  NC_000913/1542905‑1543177                                                                                                                                                     |                                                                                                                             cTTTCATCTTTACCCGATAAATGGTTATCTGGCGAAAGATGACGGCGATCATCTGGAAAGTAGAACCACTTCCCAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCggtaag                                                                                                                              <  1:161171/149‑1 (MQ=255)      aTCTTTACCCGATAAATGGTTATCTGGCGAAAGATGACGGCGATCATCTGGAAAGTAGAACCACTTCCCAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGgtaaggtaag                                                                                                                         >  1:197326/1‑149 (MQ=255)        cTTTACCCGATAAATGGTTATCTGGCGAAAGATGACGGCGATCATCTGGAAAGTAGAACCACTTCCCAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGtaaggtaagg                                                                                                                        >  3:166345/1‑148 (MQ=255)         tttACCCGATAAATGGTTATCTGGCGAAAGATGACGGCGATCATCTGGAAAGTAGAACCACTTCCCAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGaa                                                                                                                      >  2:128149/1‑149 (MQ=255)           taccataTAAATGGTTATCTGGCGAAAGATGACGGCGATAATCTGGAAAGTAGAACCACTTCCCAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGtaaggtaagg                                                                                                                        <  5:162574/139‑1 (MQ=255)                    aaTGGTTATCTGGCGAAAGATGACGGCGATCATCTGGAAAGTAGAACCACTTCCCAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCa                                                                                                            <  6:148305/148‑1 (MQ=255)                     aTGGTTATCTGGCGAAAGATGACGGCGATCATCTGGAAAGTAGAACCACTTCCCAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCggtaag                                                                                                                              >  8:56277/1‑129 (MQ=255)                     aTGGTTATCTGGCGAAAGATGACGGCGATCATCTGGAAAGTAGAACCACTTCCCAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCggtaag                                                                                                                              <  7:56277/129‑1 (MQ=255)                        gTTATCTGGCGAAAGATGACGGCGATCATCTGGAAAGTAGAACCACTTCCCAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCggtaaggt                                                                                                                            >  3:170559/1‑128 (MQ=255)                        gTTATCTGGCGAAAGATGACGGCGATCATCTGGAAAGTAGAACCACTTCCCAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCggtaaggt                                                                                                                            <  4:170559/128‑1 (MQ=255)                         ttATCTGGCGAAAGATGACGGCGATCATCTGGAAAGTAGAACCACTTCCCAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGaaa                                                                                                      <  1:99254/149‑1 (MQ=255)                                              cGATCATCTGGAAAGTAGAACCACTTCCCAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATAAAGt                                                                                   >  8:148566/1‑147 (MQ=255)                                              cGATCATCTGGAAAGTAGAACCACTTCCCAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATAAAGt                                                                                   <  7:148566/147‑1 (MQ=255)                                                 tcatcTGGAAAGTAGAACCACTTCCCAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATaaa                                                                                     <  3:94041/142‑1 (MQ=255)                                                 tcatcTGGAAAGTAGAACCACTTCCCAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATaaa                                                                                     >  4:94041/1‑142 (MQ=255)                                                        gAAAGTAGAACCACTTCCCAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATAAAGTTGATCAACg                                                                          <  1:128149/146‑1 (MQ=255)                                                        gAAAGTAGAACCACTTCCCAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATAAAGTTGATCAACGTc                                                                        <  1:177954/148‑1 (MQ=255)                                                        gAAAGTAGAACCACTTCCCAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATAAAGTTGATCAACGTCa                                                                       >  8:22280/1‑149 (MQ=255)                                                             tAGAACCACTTCCCAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATaaaaa                                                                                         <  6:21667/126‑1 (MQ=255)                                                             tAGAACCACTTCCCAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATaaaaa                                                                                         >  5:21667/1‑126 (MQ=255)                                                                         ccAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATAAAGTTGATCAACGTCACCCGCACGCCGCCGaa                                                       <  4:166345/148‑1 (MQ=255)                                                                         ccAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATAAAGTTGATCAACGTCACCCGCACGCCGCCGAAc                                                      <  2:197326/149‑1 (MQ=255)                                                                                         aaaCAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATAAAGTTGATCAACGTCACCCGCACGCCGCCGaa                                                       >  1:94013/1‑132 (MQ=255)                                                                                         aaaCAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATAAAGTTGATCAACGTCACCCGCACGCCGCCGaa                                                       <  2:94013/132‑1 (MQ=255)                                                                                         aaaCAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATAAAGTTGATCAACGTCACCCGCACGCCGCCGAACTTATCGGAAATAGcac                                      >  6:947/1‑149 (MQ=255)                                                                                                 ccATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATAAAGTTGATCAACGTCACCCGCACGCCGCCGAAc                                                      <  4:85463/125‑1 (MQ=255)                                                                                                 ccATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATAAAGTTGATCAACGTCACCCGCACGCCGCCGAAc                                                      >  3:85463/1‑125 (MQ=255)                                                                                                 ccATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATAAAGTTGATCAACGTCACCCGCACGCCGCCGAACTTATCGGAAATa                                          >  5:1061/1‑137 (MQ=255)                                                                                                 ccATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATAAAGTTGATCAACGTCACCCGCACGCCGCCGAACTTATCGGAAATa                                          <  6:1061/137‑1 (MQ=255)                                                                                                          cGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATAAAGTTGATCAACGTCACCCGCAc                                                                >  1:61581/1‑106 (MQ=255)                                                                                                          cGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATAAAGTTGATCAACGTCACCCGCAc                                                                <  2:61581/106‑1 (MQ=255)                                                                                                                 aaaGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATAAAGTTGATCAACGTCACCCGCACGCCGCCGAACTTATCGGAAATAGCACCACCAACCGACCGCGCGATGGCa               <  5:947/148‑1 (MQ=255)                                                                                                                        aTGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATAAAGTTGAt                                                                               >  4:26774/1‑77 (MQ=255)                                                                                                                        aTGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATAAAGTTGAt                                                                               <  3:26774/77‑1 (MQ=255)                                                                                                                             aTTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATAAAGTTGATCAACGTCACCCGCACGCCGCCGAACTTATCGGAAATAGCACCACCAACCGACCGCGCGATGGCACCGATAAATGGGc  <  7:22280/149‑1 (MQ=255)                                                                                                                                aCCGGAGCCTGTGCCCGGTAAGGTAATGAACAGCAGGGCACTGAAAATCTCCATAAAAATAAAGTTGATCTACGTCACCCGCACGCCGCCGAACTTATCGGTAATACCACCACCAACCGACCGCGCGATGGCAc              <  8:132000/134‑1 (MQ=255)                                                                                                                                                     |                                                                                                                             CTTTCATCTTTACCCGATAAATGGTTATCTGGCGAAAGATGACGGCGATCATCTGGAAAGTAGAACCACTTCCCAGACCCGCAGTCAGAAACAGCCCCATAAATACGGCGTAAAAGGCGATGAAATTACCGGAGCCTGTGCCCGGTAAGGTAAGGAACAGCAGGGCACTGAAAATCGCCATAAAAATAAAGTTGATCAACGTCACCCGCACGCCGCCGAACTTATCGGAAATAGCACCACCAACCGACCGCGCGATGGCACCGATAAATGGGC  >  NC_000913/1542905‑1543177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.