| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 294856 = | 152 (1.680) | 4 (0.050) | 4/238 | NT | 2.7% | intergenic (‑57/+283) | yagM/yagN | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| ? | NC_000913 | 294883 = | 142 (1.690) | intergenic (‑84/+256) | yagM/yagN | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACCTCGCCCAAAACAAATCAATGGCCGCCATTACTGGTTACGTAAAGATGTCCTCGATTTTATAGATACATTTTCTGTACGAGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCCGAGAAAAAT‑GGGGCAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/295011‑294856‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcaacaTCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAAATCGAGGACATCTTTACGTAACCAGTAATGGCGGCCATTGATTTGTTTTGGGCGAGGTAGCCCCTCAGGCAATTTG > NC_000913/294883‑295029 ACCTCGCCCAAAACAAATCAATGGCCGCCATTACTGGTTACGTAAAGATGTCCTCGATTTTATAGATACATTTTCTGTACGAGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCCGAGAAAAAT‑GG > 2:118208/1‑149 CCTCGCCCAAAACAAATCAATGGCCGCCATTACTGGTTACGTAAAGATGTCCTCGATTTTATAGATACATTTTCTGTACGAGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCCGAGAAAAAT‑GG < 2:184004/148‑1 CCTCGCCCAAAACAAATCAATGGCCGCCATTACTGGTTACGTAAAGATGTCCTCGATTTTATAGATACATTTTCTGTACGAGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCCGAGAAAAAT‑GG < 4:179659/148‑1 CCTCGCCCAAAACAAATCAATGGCCGCCATTACTGGTTACGTAAAGATGTCCTCGATTTTATAGATACATTTTCTGTACGAGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCCGAGAAAAAT‑G > 1:278955/1‑147 CCTCGCCCAAAACAAATCAATGGCCGCCATTACTGGTTACGTAAAGATGTCCTCGATTTTATAGATACATTTTCTGTACGAGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCCGAGAAAAAT‑G < 2:278955/147‑1 CTCGCCCAAAACAAATCAATGGCCGCCATTACTTGTTACGTAAAGATGTCCTCGATTTTATAGATACATTTTCTGTACGAGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCCGAGAAAAAT‑GGGG < 1:383844/149‑1 CTCGCCCAAAACAAATCAATGGCCGCCATTACTGGTTACGTAAAGATGTCCTCGATTTTATAGATACATTTTCTGTACGAGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCCGAGAAAAAT‑GGGG < 3:166155/149‑1 TCGCCCAAAACAAATCAATGGCCGCCATTACTGGTTACGTAAAGATGTCCTCGATTTTATAGATACATTTTCTGTACGAGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCCGAGAAAAAT‑GGGG > 3:325437/1‑148 TCGCCCAAAACAAATCAATGGCCGCCATTACTGGTTACGTAAAGATGTCCTCGATTTTATAGATACATTTTCTGTACGAGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCCGAGAAAAAT‑GGGG > 5:275642/1‑148 TCGCCCAAAACAAATCAATGGCCGCCATTACTGGTTACGTAAAGATGTCATCGATTTTATAGATACATTTTCTGTACGAGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCCGAGAAAAAT‑GGGG > 8:209749/1‑148 CCAAAACAAATCAATGGCCGCCATTACTGGTTACGTAAAGATGTCCTCCATTTTATAGATACATTATCTGTACGAGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCCGAGAAAAAT‑GTGGCAACA > 3:355944/1‑149 ACATTTTCTGTACGAGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCCATTTTTCTC‑GGGGCAACATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAAT > 8:215463/1‑149 CTGTACGAGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCC‑AGTTTTCTCGGGGCAACATCGCTATAAATCAATAAAATTAAATCTGGAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTA > 2:266560/1‑149 AGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCCATTTTTCTC‑GGGGCAACATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAAATC < 7:215463/149‑1 TTTATAGCGATGTTGCCCCGAGAAAAAT‑GGGGCAACATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAAATCGAGGACATCTTTACGTAACCAGTAATGGCGGCCATTGA > 6:406864/1‑149 GCAACATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAAATCGAGGACATCTTTACGTAACCAGTAATGGCGGCCATTGATTTGTTTTGGGCGAGGTAGCCCCTCAGGCAA < 3:335671/149‑1 GCAACATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAAATCGAGGACATCTTTACGTAACCAGTAATGGCGGCCATTGATTTGTTTTGGGCGAGGTAGCCCCTCAGGAAA > 6:248338/1‑149 CAACATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAAATCGAGGACATCTTTACGTAACCAGTAATGGCGGCCATTGATTTGTTTTGGGCGAGGTAGCCCCTCAGGCAAT < 1:262676/149‑1 AACAACGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTATCTCGTACAGAAAATGTATATATAAAATCGAGGACATCTTTACGTAACCAGTAATCGCGTCCATTGATTAGTTTTCTGCGAGCAAGCCCCTCAGGCAATT > 5:75498/1‑149 CATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAAATCGAGGACATCTTTACGTAACCAGTAATGGCGGCCATTGATTTGTTTTGGGCGAGGTAGCCCCTCAGGCAATTTG < 4:294283/149‑1 CATCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAAATCGAGGACATCTTTACGTAACCAGTAATGGCGGCCATTGATTTGTTTTGGGCGAGGTAGCCCCTCAGGCAATTTG > 6:252645/1‑149 ACCTCGCCCAAAACAAATCAATGGCCGCCATTACTGGTTACGTAAAGATGTCCTCGATTTTATAGATACATTTTCTGTACGAGAAAGTCTGTAATAAATTACAGATTTAATTTTATTGATTTATAGCGATGTTGCCCCGAGAAAAAT‑GGGGCAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/295011‑294856‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcaacaTCGCTATAAATCAATAAAATTAAATCTGTAATTTATTACAGACTTTCTCGTACAGAAAATGTATCTATAAAATCGAGGACATCTTTACGTAACCAGTAATGGCGGCCATTGATTTGTTTTGGGCGAGGTAGCCCCTCAGGCAATTTG > NC_000913/294883‑295029 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |