mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 31.8% | 108.5 / 73.0 | 88 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 1,747,157 | 0 | C | G | 20.0% | 99.5 / 11.0 | 43 | A9A (GCC→GCG) | ydhS | putative oxidoreductase |
| Marginal new junction evidence (lowest skew 10 of 94 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 42 (0.490) | 13 (0.170) | 13/250 | 4.9 | 25.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 39 (0.510) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 50 (0.580) | 13 (0.170) | 12/250 | 5.2 | 23.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 40 (0.530) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 4542690 | 106 (1.230) | 6 (0.070) | 6/264 | 7.5 | 5.0% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 128 (1.590) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542682 = | 112 (1.300) | 6 (0.070) | 6/264 | 7.5 | 4.9% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 129 (1.610) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 3534496 | 91 (1.060) | 6 (0.080) | 5/260 | 7.9 | 6.6% | intergenic (+56/+20) | pck/envZ | phosphoenolpyruvate carboxykinase [ATP]/sensory histidine kinase in two‑component regulatory system with OmpR |
| ? | NC_000913 | = 3534502 | 85 (1.070) | intergenic (+62/+14) | pck/envZ | phosphoenolpyruvate carboxykinase [ATP]/sensory histidine kinase in two‑component regulatory system with OmpR | |||||
| * | ? | NC_000913 | 4058206 = | 109 (1.270) | 5 (0.060) | 5/264 | 8.0 | 4.5% | intergenic (‑172/‑201) | glnA/typA | glutamine synthetase/GTP‑binding protein |
| ? | NC_000913 | 4058257 = | 108 (1.340) | intergenic (‑223/‑150) | glnA/typA | glutamine synthetase/GTP‑binding protein | |||||
| * | ? | NC_000913 | 2729475 = | 54 (0.630) | 6 (0.080) | 5/262 | 8.0 | 10.1% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 4168363 | 57 (0.710) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 2729443 = | 51 (0.590) | 6 (0.080) | 5/262 | 8.0 | 11.5% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | 2729485 = | 45 (0.560) | intergenic (‑41/+131) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 1689809 = | 101 (1.180) | 5 (0.060) | 5/266 | 8.0 | 5.3% | intergenic (+58/‑43) | manA/ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| ? | NC_000913 | 1689830 = | 83 (1.020) | intergenic (+79/‑22) | manA/ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein | |||||
| * | ? | NC_000913 | 2904081 = | 114 (1.330) | 5 (0.060) | 5/268 | 8.1 | 4.3% | intergenic (+707/+666) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| ? | NC_000913 | 2904099 = | 112 (1.370) | intergenic (+725/+648) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis | |||||