New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3467138	33 (1.100)	4 (0.140)	4/206	2.9	12.2%	intergenic (‑147/+22)	bfd/chiA	bacterioferritin‑associated ferredoxin/periplasmic endochitinase
	?	NC_000913	= 3467144	27 (0.970)					intergenic (‑153/+16)	bfd/chiA	bacterioferritin‑associated ferredoxin/periplasmic endochitinase
Rejected: Frequency below/above cutoff threshold.

AATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3467073‑3467138 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgatacCTTCCAGTATCGCCGCATTTTTTGTCAATGGGCTACTTTTGGTAGCCCATTATTTTTATTCATATTTCTATTCTTTGCTTAAAAAAGAGTCTTTCCGTAATTGAAATAAGAACTATTTTCATTTATTTTTGAAGAAAGTAT  <  NC_000913/3467144‑3467004                                                                                                                                                                                                                 AATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACCTTCCAGTATCGCCGCATTTTTT                                                                                                                        <  5:149342/89‑1 AATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACCTTCCAGTATCGCCGCATTTTTT                                                                                                                        >  6:149342/1‑89                  AAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACCTTCCAGTATCGCC                                                                                                                                 <  5:66679/63‑1                  AAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACCTTCCAGTATCGCC                                                                                                                                 >  6:66679/1‑63                                                            GCGATACCTTCCAGTATCGCCGCATTTTTTGTCAATGGGCTACTTTTGGTAGCCCATTATTTTTATTCATATTTCTATTCTTTGCTTAAAAAAGAGTCTTTCCGTAATTGAAATAAGAACTATTTTCATTTATTTTTGAAGAAAGTAT  <  2:115868/148‑1                                                                                                                                                                                                                 AATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3467073‑3467138 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgatacCTTCCAGTATCGCCGCATTTTTTGTCAATGGGCTACTTTTGGTAGCCCATTATTTTTATTCATATTTCTATTCTTTGCTTAAAAAAGAGTCTTTCCGTAATTGAAATAAGAACTATTTTCATTTATTTTTGAAGAAAGTAT  <  NC_000913/3467144‑3467004

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.