| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3467138 | 33 (1.100) | 4 (0.140) | 4/206 | 2.9 | 12.2% | intergenic (‑147/+22) | bfd/chiA | bacterioferritin‑associated ferredoxin/periplasmic endochitinase |
| ? | NC_000913 | = 3467144 | 27 (0.970) | intergenic (‑153/+16) | bfd/chiA | bacterioferritin‑associated ferredoxin/periplasmic endochitinase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GACTCCCGTATACTTTCTTCAAAAATAAATGAAAATAGTTCTTATTTCAATTACGGAAAGACTCTTTTTTAAGCAAAGAATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTATTGCTTAGTAAACGGCGCGAAGATTTCGCTAAATGCGTACTTCGGTGCCTGTTCTTTAGTCAGGCCGTGGAATTCCGGAGACAGGTTAGTGCCGCCCGGCAGGTCGCGCGCGATTGAC > NC_000913/3466995‑3467280 | gaCTCCCGTATACTTTCTTCAAAAATAAATGAAAATAGTTCTTATTTCAATTACGGAAAGACTCTTTTTTAAGCAAAGAATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGaa < 4:133828/149‑1 (MQ=255) ataCTTTCTTCAAAAATAAATGAAAATAGTTCTTATTTCAATTACGGAAAGACTCTTTTTTAAGCAAAGAATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGAAGgtatcgc < 2:115868‑M2/148‑8 (MQ=255) aaaaaTAAATGAAAATAGTTCTTATTTCAATTACGGAAAGACTCTTTTTTAAGCAAAGAATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTa < 1:115868/148‑1 (MQ=255) aaaaTAAATGAAAATAGTTCTTATTTCAATTACGGAAAGACTCTTTTTTAAGCAAAGAATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTAtt > 8:58722/1‑149 (MQ=255) ttATTTCAATTACGGAAAGACTCTTTTTTAAGCAAAGAATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTATTGCTTa > 6:91801/1‑134 (MQ=255) ttATTTCAATTACGGAAAGACTCTTTTTTAAGCAAAGAATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTATTGCTTa < 5:91801/134‑1 (MQ=255) cGGAAAGACTCTTTTTTAAGCAAAGAATAGAAATAAGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTATTGCTTAGTAAACGGCGCGaa < 1:165608/136‑1 (MQ=255) cGGAAAGACTCTTTTTTAAGCAAAGAATAGAAATAAGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTATTGCTTAGTAAACGGCGCGaa > 2:165608/1‑136 (MQ=255) ggAAAGACTCTTTTTTAAGCAAAGAATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGAAg < 8:108134/96‑1 (MQ=255) aaaGACTCTTTTTTAAGCAAAGAATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGaa > 5:58987/1‑93 (MQ=255) aaaGACTCTTTTTTAAGCAAAGAATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGaa < 6:58987/93‑1 (MQ=255) aaaGACTCTTTTTTAAGCAAAGAATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTATTGCTTAGTAAACGGCGCGAAGATTTCGCTAAATGCg > 4:42655/1‑149 (MQ=255) tctTTTTTAAGCAAAGAATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGaa > 3:132361/1‑87 (MQ=255) tctTTTTTAAGCAAAGAATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGaa < 4:132361/87‑1 (MQ=255) ttttttAAGCAAAGAATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTATTGCTTAGTAAACGGCGCGAAGATTTCGCTAAATGc < 3:49371/140‑1 (MQ=255) ttttttAAGCAAAGAATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTATTGCTTAGTAAACGGCGCGAAGATTTCGCTAAATGc > 4:49371/1‑140 (MQ=255) tttttAAGCAAAGAATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTATTGCTTAGTAAACGGCGCGAAGATTTCGCTAAATGCGTa > 5:111274/1‑142 (MQ=255) tttttAAGCAAAGAATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTATTGCTTAGTAAACGGCGCGAAGATTTCGCTAAATGCGTa < 6:111274/142‑1 (MQ=255) gCAAAGAATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGAAGGTATCGCCAaca > 6:43166/1‑90 (MQ=255) gCAAAGAATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGAAGGTATCGCCAaca < 5:43166/90‑1 (MQ=255) aaTAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACcttccagtatcgccgcatttttt > 6:149342‑M1/1‑66 (MQ=255) aaTAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACcttccagtatcgccgcatttttt < 5:149342‑M1/89‑24 (MQ=255) tGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTATTGCTTAGTAAACGGCGCGAAGATTTCGCTAAATGCGTACTTCGGTGCCTGTTCTTTAGTCAGGCCGt < 3:42655/148‑1 (MQ=255) aaTAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTATTGCTTAGTaaa < 2:70421/90‑1 (MQ=255) aaaTAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACcttccagtatcgcc > 6:66679‑M1/1‑49 (MQ=255) aaaTAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACcttccagtatcgcc < 5:66679‑M1/63‑15 (MQ=255) tACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTATTGCTTAGTAAACGGCGCGAAGATTTCGCTAAATGCGTACTTCGGTGCCTGTTCTTTAGTCAGGCCGTGGAATTCCGGAGACAg > 3:84202/1‑146 (MQ=255) tACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTATTGCTTAGTAAACGGCGCGAAGATTTCGCTAAATGCGTACTTCGGTGCCTGTTCTTTAGTCAGGCCGTGGAATTCCGGAGACAg < 4:84202/146‑1 (MQ=255) aTTGACAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTATTGCTTAGTAAACGGCGCGAAGAttt > 1:123830/1‑73 (MQ=255) aTTGACAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTATTGCTTAGTAAACGGCGCGAAGAttt < 2:123830/73‑1 (MQ=255) aTTGACAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTATTGCTTAGTAAACGGCGCGAAGATTTCGCTAAATGCGTACTTCg > 7:59636/1‑91 (MQ=255) aTTGACAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTATTGCTTAGTAAACGGCGCGAAGATTTCGCTAAATGCGTACTTCg < 8:59636/91‑1 (MQ=255) aCAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTATTGCTTAGTAAACGGCGCGAAGATTTCGCTAAATGCGTACTTCg < 4:147907/87‑1 (MQ=255) aCAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTATTGCTTAGTAAACGGCGCGAAGATTTCGCTAAATGCGTACTTCg > 3:147907/1‑87 (MQ=255) aCAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTATTGCTTAGTAAACGGCGCGAAGATTTCGCTAAATGCGTACTTCGGTGCCTGTTCTTTAGTCAGGCCGTGGAATTCCGGAGACAGGTTAGTGCCGCCCGGCAGGTc < 5:165471/148‑1 (MQ=255) aaaaaaTGCGGCGATACTGGAAGgtatcgccgcattttttgtcaatgggctacttttggtagcccattatttttattcatatttctatt < 5:149342‑M2/89‑67 (MQ=255) aaaaaaTGCGGCGATACTGGAAGgtatcgccgcattttttgtcaatgggctacttttggtagcccattatttttattcatatttctatt > 6:149342‑M2/1‑23 (MQ=255) ggcgATACTGGAAGgtatcgccgcattttttgtcaatgggctacttttggtagcccattattt < 5:66679‑M2/63‑50 (MQ=255) ggcgATACTGGAAGgtatcgccgcattttttgtcaatgggctacttttggtagcccattattt > 6:66679‑M2/1‑14 (MQ=255) ggcgATACTGGAAGGTATCGCCAACACATTTATTGCTTAGTAAACGGCGCGAAGATTTCGCTAAATGCGTACTTCGGTGCCTGTTCTTTAGTCAGGCCGTGGAATTCCGGAGACAGGTTAGTGCCGCCCGGCAGGTCGCGCGCGa > 2:169057/1‑145 (MQ=255) ggcgATACTGGAAGGTATCGCCAACACATTTATTGCTTAGTAAACGGCGCGAAGATTTCGCTAAATGCGTACTTCGGTGCCTGTTCTTTAGTCAGGCCGTGGAATTCCGGAGACAGGTTAGTGCCGCCCGGCAGGTCGCGCGCGa < 1:169057/145‑1 (MQ=255) gcgATACcttccagtatcgccgcattttttgtcaatgggctacttttggtagcccattatttttattcatatttctattctttgcttaaaaaagagtctttccgtaattgaaataagaactattttcatttatttttgaagaaagtat < 2:115868‑M1/148‑142 (MQ=255) gATACTGGAAGGTATCGCCAACACATTTATTGCTTAGTAAACGGCGCGAAGATTTCGCTAAATGCGTACTTCGGTGCCTGTTCTTTAGTCAGGCCGTGGAATTCCGGAGACAGGTTAGTGCCGCCCGGCAGGTCGCGCGCGATTGAc > 1:139381/1‑147 (MQ=255) | GACTCCCGTATACTTTCTTCAAAAATAAATGAAAATAGTTCTTATTTCAATTACGGAAAGACTCTTTTTTAAGCAAAGAATAGAAATATGAATAAAAATAATGGGCTACCAAAAGTAGCCCATTGACAAAAAATGCGGCGATACTGGAAGGTATCGCCAACACATTTATTGCTTAGTAAACGGCGCGAAGATTTCGCTAAATGCGTACTTCGGTGCCTGTTCTTTAGTCAGGCCGTGGAATTCCGGAGACAGGTTAGTGCCGCCCGGCAGGTCGCGCGCGATTGAC > NC_000913/3466995‑3467280 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |