New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1859579 =29 (0.960)6 (0.210) 5/208 2.6 18.7% coding (651/1380 nt) ydjK putative MFS sugar transporter, membrane protein
?NC_000913 1859626 = 25 (0.890)coding (604/1380 nt) ydjK putative MFS sugar transporter, membrane protein
Rejected: Frequency below/above cutoff threshold.

CGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACT  >  NC_000913/1859434‑1859707
                                                                                                                                                 |                                                                                                                                
cgcgTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTcc                                                                                                                               >  6:61000/1‑149 (MQ=255)
    ttggcaactggtcatatccgctctgttcattgatagcgatgggactcacgccgctgattagtgcagagtggaactggcgggtacaactgcttatccctgcaatattgtcgcttatcgctacggcgctggcctggcgctactTTCCTGa                                                                                                                            >  4:110890‑M1/142‑148 (MQ=255)
        aGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGaatccc                                                                                                                       >  5:97267/1‑144 (MQ=255)
         aactggtcatatccgctctgttcattgatagcgatgggactcacgccgctgattagtgcagagtggaactggcgggtacaactgcttatccctgcaatattgtcgcttatcgctacggcgctggcctggcgctactTTCCt                                                                                                                              <  4:122560‑M1/5‑1 (MQ=255)
         aactggtcatatccgctctgttcattgatagcgatgggactcacgccgctgattagtgcagagtggaactggcgggtacaactgcttatccctgcaatattgtcgcttatcgctacggcgctggcctggcgctactTTCCt                                                                                                                              >  3:122560‑M1/137‑141 (MQ=255)
                                 ttgatagcgatgggactcacgccgctgattagtgcagagtggaactggcgggtacaactgcttatccctgcaatattgtcgcttatcgctacggcgctggcctggcgctactTTCCTGAATCC‑‑CCGCGCGATTCCAGCCAGCGCGGGGa                                                                                            >  1:123025‑M1/113‑149 (MQ=255)
                                 ttgatagcgatgggactcacgccgctgattagtgcagagtggaactggcgggtacaactgcttatccctgcaatattgtcgcttatcgctacggcgctggcctggcgctactTTCCTGAATCC‑‑CCGCGCGATTCCAGCCAGCGCGGGGa                                                                                            >  7:7759‑M1/113‑149 (MQ=255)
                                 aaTACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCTAGCCAGCGCgg                                                                                               <  5:61000/148‑1 (MQ=255)
                                                 tcacgccgctgattagtgcagagtggaactggcgggtacaactgcttatccctgcaatattgtcgcttatcgctacggcgctggcctggcgctactTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTc                                                                                         >  2:115165‑M1/97‑138 (MQ=255)
                                                 tcacgccgctgattagtgcagagtggaactggcgggtacaactgcttatccctgcaatattgtcgcttatcgctacggcgctggcctggcgctactTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTc                                                                                         <  1:115165‑M1/42‑1 (MQ=255)
                                                             gTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTc                                                                                         <  4:69200/126‑1 (MQ=255)
                                                                  caGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGcgcg                                                                                                >  1:25116/1‑114 (MQ=255)
                                                                  caGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGcgcg                                                                                                <  2:25116/114‑1 (MQ=255)
                                                                            actggcgggtacaactgcttatccctgcaatattgtcgcttatcgctacggcgctggcctggcgctactTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAgc                                                                              <  8:84862‑M1/53‑1 (MQ=255)
                                                                            actggcgggtacaactgcttatccctgcaatattgtcgcttatcgctacggcgctggcctggcgctactTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAgc                                                                              >  7:84862‑M1/70‑122 (MQ=255)
                                                                                      aaaGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTa                                                                                >  3:137844/1‑110 (MQ=255)
                                                                                      aaaGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTa                                                                                >  3:140040/1‑110 (MQ=255)
                                                                                      aaaGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTa                                                                                <  4:137844/110‑1 (MQ=255)
                                                                                      aaaGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTa                                                                                <  4:140040/110‑1 (MQ=255)
                                                                                                ccGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTa                                                                                >  2:13749/1‑100 (MQ=255)
                                                                                                ccGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTa                                                                                <  1:13749/100‑1 (MQ=255)
                                                                                                  gTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGc                                         <  2:161726/137‑1 (MQ=255)
                                                                                                  gTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGc                                         >  1:161726/1‑137 (MQ=255)
                                                                                                           aTGACGCCTTCTTCTATCCTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCgg                                                                                               <  7:42096/74‑1 (MQ=255)
                                                                                                           aTGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCgg                                                                                               >  8:42096/1‑74 (MQ=255)
                                                                                                           aTGACGCCTTCTTCTATACTCCGCATGACCTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATaa                                                      >  7:22317/1‑115 (MQ=255)
                                                                                                           aTGACGCCTTCTTCTATACTCCGCATGACCTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATaa                                                      <  8:22317/115‑1 (MQ=255)
                                                                                                                gCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTa                        >  2:83272/1‑140 (MQ=255)
                                                                                                                gCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTa                        <  1:83272/140‑1 (MQ=255)
                                                                                                                 ccTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCa                                        >  4:40154/1‑123 (MQ=255)
                                                                                                                 ccTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCa                                        <  3:40154/123‑1 (MQ=255)
                                                                                                                  cttcttCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCa                              <  2:55360/132‑1 (MQ=255)
                                                                                                                  cttcttCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCa                              >  1:55360/1‑132 (MQ=255)
                                                                                                                      ttctATACTCCGCATGACTTTCTTGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTa                                                             <  7:107805/97‑1 (MQ=255)
                                                                                                                      ttctATACTCCGCATGACTTTCTTGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTa                                                             >  8:107805/1‑97 (MQ=255)
                                                                                                                              tCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACt  >  3:74288/1‑148 (MQ=255)
                                                                                                                                              ggCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGtt                           >  2:122488/1‑107 (MQ=255)
                                                                                                                                              ggCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGtt                           <  1:122488/107‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                
CGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACT  >  NC_000913/1859434‑1859707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.