New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1859579 =29 (0.960)6 (0.210) 5/208 2.6 18.7% coding (651/1380 nt) ydjK putative MFS sugar transporter, membrane protein
?NC_000913 1859626 = 25 (0.890)coding (604/1380 nt) ydjK putative MFS sugar transporter, membrane protein
Rejected: Frequency below/above cutoff threshold.

CACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAA  >  NC_000913/1859510‑1859766
                                                                                                                    |                                                                                                                                            
actggcgggtacaactgcttatccctgcaatattgtcgcttatcgctacggcgctggcctggcgctactTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAgc                                                                                                                                         <  8:84862‑M1/53‑1 (MQ=255)
actggcgggtacaactgcttatccctgcaatattgtcgcttatcgctacggcgctggcctggcgctactTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAgc                                                                                                                                         >  7:84862‑M1/70‑122 (MQ=255)
          aaaGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTa                                                                                                                                           <  4:140040/110‑1 (MQ=255)
          aaaGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTa                                                                                                                                           <  4:137844/110‑1 (MQ=255)
          aaaGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTa                                                                                                                                           >  3:137844/1‑110 (MQ=255)
          aaaGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTa                                                                                                                                           >  3:140040/1‑110 (MQ=255)
                    ccGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTa                                                                                                                                           <  1:13749/100‑1 (MQ=255)
                    ccGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTa                                                                                                                                           >  2:13749/1‑100 (MQ=255)
                      gTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGc                                                                                                    >  1:161726/1‑137 (MQ=255)
                      gTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGc                                                                                                    <  2:161726/137‑1 (MQ=255)
                               aTGACGCCTTCTTCTATACTCCGCATGACCTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATaa                                                                                                                 <  8:22317/115‑1 (MQ=255)
                               aTGACGCCTTCTTCTATACTCCGCATGACCTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATaa                                                                                                                 >  7:22317/1‑115 (MQ=255)
                                    gCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTa                                                                                   <  1:83272/140‑1 (MQ=255)
                                    gCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTa                                                                                   >  2:83272/1‑140 (MQ=255)
                                     ccTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCa                                                                                                   >  4:40154/1‑123 (MQ=255)
                                     ccTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCa                                                                                                   <  3:40154/123‑1 (MQ=255)
                                      cttcttCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCa                                                                                         <  2:55360/132‑1 (MQ=255)
                                      cttcttCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCa                                                                                         >  1:55360/1‑132 (MQ=255)
                                          ttctATACTCCGCATGACTTTCTTGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTa                                                                                                                        >  8:107805/1‑97 (MQ=255)
                                          ttctATACTCCGCATGACTTTCTTGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTa                                                                                                                        <  7:107805/97‑1 (MQ=255)
                                                  tCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACt                                                             >  3:74288/1‑148 (MQ=255)
                                                               gctactttcctgaatccccgcgctggctggaatcgcgcggacggtatcaggaaAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGt                                                                          >  7:84862‑M2/54‑122 (MQ=255)
                                                               gctactttcctgaatccccgcgctggctggaatcgcgcggacggtatcaggaaAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGt                                                                          <  8:84862‑M2/69‑1 (MQ=255)
                                                                  ggCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGtt                                                                                      <  1:122488/107‑1 (MQ=255)
                                                                  ggCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGtt                                                                                      >  2:122488/1‑107 (MQ=255)
                                                                       CCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGa                                                                                               >  4:2159‑M1/1‑93 (MQ=255)
                                                                       CCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGa                                                                                               <  3:2159‑M1/93‑1 (MQ=255)
                                                                          gaatccccgcgctggctggaatcgcgcggacggtatcaggaaAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGa                                               >  2:115165‑M2/43‑138 (MQ=255)
                                                                          gaatccccgcgctggctggaatcgcgcggacggtatcaggaaAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGa                                               <  1:115165‑M2/96‑1 (MQ=255)
                                                                               tccccgcgctggctggaatcgcgcggggattcaggaaAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCaa                               >  7:7759‑M2/38‑149 (MQ=255)
                                                                               tccccgcgctggctggaatcgcgcggggattcaggaaAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCaa                               >  1:123025‑M2/38‑149 (MQ=255)
                                                                                             cagccagcGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGa                  <  4:74288/148‑1 (MQ=255)
                                                                                                  agcGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTAc                                                                                  <  5:55411/79‑1 (MQ=255)
                                                                                                  agcGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTAc                                                                                  >  6:55411/1‑79 (MQ=255)
                                                                                                            ttCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCa                                                                                                   >  8:6755/1‑52 (MQ=255)
                                                                                                             tcaggaaAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCaa  >  4:110890‑M2/8‑148 (MQ=255)
                                                                                                               aggaaAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGtt       <  4:122560‑M2/136‑1 (MQ=255)
                                                                                                               aggaaAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGtt       >  3:122560‑M2/6‑141 (MQ=255)
                                                                                                                    |                                                                                                                                            
CACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGGATAAGCAGTTGTACCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAA  >  NC_000913/1859510‑1859766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.