New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1941819 =	30 (1.000)	8 (0.290)	8/206	1.9	23.2%	coding (765/933 nt)	znuA	zinc ABC transporter periplasmic binding protein
	?	NC_000913	1941845 =	25 (0.900)					coding (739/933 nt)	znuA	zinc ABC transporter periplasmic binding protein

GTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCAGGGTTAACGGTAAAATGACCAAGCGGTGTCAGTCCAAACTGTTTTTCGAAATA  >  NC_000913/1941681‑1941950                                                                                                                                           |                                                                                                                                     gTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCaaaaa                                                                                                                               >  3:95410/1‑146 (MQ=255) gTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCaaaaa                                                                                                                               <  4:95410/146‑1 (MQ=255)                                cTTGTTTTACCCAGTTTGATATTCGTCCCCAGTGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCa                                                                                                                           <  8:84400/119‑1 (MQ=255)                                       gaaaaacagtttggactgacaccgcttggtcattttaccgttaaccctgagattcaacctggcgcgcagcgtttacatgaaataagaacacagttggttgAGCaaaaa                                                                                                                               <  8:25069‑M1/8‑1 (MQ=255)                                       gaaaaacagtttggactgacaccgcttggtcattttaccgttaaccctgagattcaacctggcgcgcagcgtttacatgaaataagaacacagttggttgAGCaaaaa                                                                                                                               >  7:25069‑M1/101‑108 (MQ=255)                                                 gATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCt                                                                           >  2:147247/1‑149 (MQ=255)                                                  atatTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTg                                                                          <  1:147247/149‑1 (MQ=255)                                                             cAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTTGCt                                                                                                            <  8:14582/104‑1 (MQ=255)                                                             cAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTTGCt                                                                                                            >  7:14582/1‑104 (MQ=255)                                                                    tCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCGCAGCAAAAACGCAGGTTGC‑TTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAAtctc                                                        <  3:131376/149‑1 (MQ=255)                                                                               ttaaccctgagattcaacctggcgcgcagcgtttacatgaaataagaacacagttggttgAGCAAAAACGCAGGTTGC‑TTTTTGc                                                                                                             <  3:3991‑M1/25‑1 (MQ=255)                                                                               ttaaccctgagattcaacctggcgcgcagcgtttacatgaaataagaacacagttggttgAGCAAAAACGCAGGTTGC‑TTTTTGc                                                                                                             >  4:3991‑M1/61‑85 (MQ=255)                                                                                    gAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAg                                                                                                                                     >  1:26513/1‑57 (MQ=255)                                                                                    gAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAg                                                                                                                                     <  2:26513/57‑1 (MQ=255)                                                                                    cctgagattcaacctggcgcgcagcgtttacatgaaataagaacacagttggttgAGCAAAAACGCAGGTTGC‑ttt                                                                                                                 >  8:85574‑M1/56‑76 (MQ=255)                                                                                    cctgagattcaacctggcgcgcagcgtttacatgaaataagaacacagttggttgAGCAAAAACGCAGGTTGC‑ttt                                                                                                                 <  7:85574‑M1/21‑1 (MQ=255)                                                                                         gATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCa                                                       <  8:38966/129‑1 (MQ=255)                                                                                         gATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCa                                                       >  7:38966/1‑129 (MQ=255)                                                                                             tCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTTGCTCAACCAACTGTGTTCTTATTTCAt                                                                                    <  8:27331/96‑1 (MQ=255)                                                                                             tCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTTGCTCAACCAACTGTGTTCTTATTTCAt                                                                                    >  7:27331/1‑96 (MQ=255)                                                                                               ccTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAACCGCAGGTTGC‑TTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCAGGGTTAACGGTAAAATGACCAAGc                               <  3:99192/147‑1 (MQ=255)                                                                                               ccTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTTGCTCAACCAACTGTGTTCTTATTTCa                                                                                     <  3:24061/93‑1 (MQ=255)                                                                                               ccTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTTGCTCAACCAACTGTGTTCTTATTTCa                                                                                     >  4:24061/1‑93 (MQ=255)                                                                                               ccTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCAGGGTTAACGGTAAAATGACCAAGc                               >  4:99192/1‑147 (MQ=255)                                                                                                cctggcgcgcagcgtttacatgaaataagaacacagttggttgAGCAAAAACGCAGGTTGC‑TTTTTGCTcaa                                                                                                         >  5:141143‑M1/44‑72 (MQ=255)                                                                                                cctggcgcgcagcgtttacatgaaataagaacacagttggttgAGCAAAAACGCAGGTTGC‑TTTTTGCTcaa                                                                                                         <  6:141143‑M1/29‑1 (MQ=255)                                                                                                 tCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTTGCTCAACCAACTGTGTTCTTATTTCATg                                                                                   >  6:64397/1‑93 (MQ=255)                                                                                                 tCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTTGCTCAACCAACTGTGTTCTTATTTCATg                                                                                   <  5:64397/93‑1 (MQ=255)                                                                                                       gACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTCGCTCAACCAACTGTGTTCTTATTTCATGTaa                                                                                >  7:106219/1‑90 (MQ=255)                                                                                                       gACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTCGCTCAACCAACTGTGTTCTTATTTCATGTaa                                                                                <  8:106219/90‑1 (MQ=255)                                                                                                            tctcAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCa                                                       <  6:169518/110‑1 (MQ=255)                                                                                                            tctcAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCa                                                       >  5:169518/1‑110 (MQ=255)                                                                                                            tctcAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCAGGGTTAACGGTAAAAt                                       <  4:37480/126‑1 (MQ=255)                                                                                                            tctcAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCAGGGTTAACGGTAAAAt                                       >  3:37480/1‑126 (MQ=255)                                                                                                            tctcAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCAGGGTTAACGGTAAAATGAcc                                   >  7:50636/1‑130 (MQ=255)                                                                                                            tctcAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCAGGGTTAACGGTAAAATGAcc                                   <  8:50636/130‑1 (MQ=255)                                                                                                                         tGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCAGGGTTAACGGTAAAATGACCaa                                 >  3:94211/1‑119 (MQ=255)                                                                                                                         tGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCAGGGTTAACGGTAAAATGACCaa                                 <  4:94211/119‑1 (MQ=255)                                                                                                                              acacagttggttgAGCAAAAA‑GCAACCTGCGTTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCAGGGTTAACGGTAAAATGACCAAGCGGTGTCAGTCCAAACTGTTTTTCGAAATa  <  2:111646‑M1/132‑1 (MQ=255)                                                                                                                              acacagttggttgAGCAAAAA‑GCAACCTGCGTTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGATGCGCGCCAGGTTGAATCTCAGGGTTAACGGTAAAATGACCAAGCGGTGTCAGTCCAAACTGTTTTTCGAAATa  >  1:111646‑M1/14‑145 (MQ=255)                                                                                                                                           |                                                                                                                                     GTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGC‑TTTTTGCTCAACCAACTGTGTTCTTATTTCATGTAAACGCTGCGCGCCAGGTTGAATCTCAGGGTTAACGGTAAAATGACCAAGCGGTGTCAGTCCAAACTGTTTTTCGAAATA  >  NC_000913/1941681‑1941950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.