New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3555446	20 (0.580)	4 (0.130)	4/226	3.9	15.6%	coding (2362/2706 nt)	malT	mal regulon transcriptional activator
	?	NC_000913	= 3555468	25 (0.790)					coding (2384/2706 nt)	malT	mal regulon transcriptional activator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACTGTACTGGCAGGCCGGACGTAAAAGTGACGCCCAGCGCGTGTTGCTGGACGCATTAAAACTGGCGAATCGCACCGGATTTATCAGCCATTTTGTCATCGAAGGCGAAGCGATGGCGCAACAACTGCGTCAGCTGATTCAGCTTAATACGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3555291‑3555446 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatacgctgcGCGCGATGCTGTTCCAGTTCCGGCAGCGTATTAAGCTGAATCAGCTGACGCAGTTGTTGCGCCATCGCTTCGCCTTCGATGACAAAATGGCTGATAAATCCGGTG  <  NC_000913/3555468‑3555364                                                                                                                                                                                                                                                                       AACTGTACTGGCGGGCCGGACGTAAAAGTGACGCCCAGCGCGTGTTGCTGGACGCATTAAAACTGGCGAATCGCACCGGATTTATCAGCCATTTTGTCATCGAAGGCGAAGCGATGGCGCAACAACTGCGTCAGCTGATTCAGCTTAAT                                                                                                                  <  1:39863/149‑1      TACTGGCAGGCCGGACGTAAAAGTGACGCCCAGCGCGTGTTGCTGGACGCATTAAAACTGGCGAATCGCACCGGATTTATCAGCCATTTTGTCATCGAAGGCGAAGCGATGGCGCAACAACTGCGTCAGCTGATTCAGCTTAATACGCT                                                                                                             <  2:71228/149‑1                                                   GACGCATTAAAACTGGCGAATCGCACCGGATTTATCAGCCATTTTGTCATCGAAGGCGAAGCGATGGCGCAACAACTGCGTCAGCTGATTCAGCTTAATACGCTGCGCGCGATGCTGTTCCAGTTCCGGCAGCGTATTAAG                                                                        <  3:29850/141‑1                                                   GACGCATTAAAACTGGCGAATCGCACCGGATTTATCAGCCATTTTGTCATCGAAGGCGAAGCGATGGCGCAACAACTGCGTCAGCTGATTCAGCTTAATACGCTGCGCGCGATGCTGTTCCAGTTCCGGCAGCGTATTAAG                                                                        >  4:29850/1‑141                                                                          CACCGGATTTATCAGCCATTTTGTCATCGAAGGCGAAGCGATGGCGCAACAACTGCGTCAGCTGATTCAGCTTAATACGCTGCGCGCGATACTGTTCCAGTTCCGGCAGCGTA                                                                             <  1:54129/113‑1                                                                          CACCGGATTTATCAGCCATTTTGTCATCGAAGGCGAAGCGATGGCGCAACAACTGCGTCAGCTGATTCAGCTTAATACGCTGCGCGCGATACTGTTCCAGTTCCGGCAGCGTA                                                                             >  2:54129/1‑113                                                                                                                                                        GCTGCGCGCGATGCTGTTCCAGTTCCGGCAGCGTATTAAGCTGAATCAGCTGACGCAGTTGTTGCGCCATCGCTTCGCCTTCGATGACAAAATGGCTGATAAATCCGGTG  <  7:17338/110‑1                                                                                                                                                        GCTGCGCGCGATGCTGTTCCAGTTCCGGCAGCGTATTAAGCTGAATCAGCTGACGCAGTTGTTGCGCCATCGCTTCGCCTTCGATGACAAAATGGCTGATAAATCCGGTG  >  8:17338/1‑110                                                                                                                                                                                                                                                                       AACTGTACTGGCAGGCCGGACGTAAAAGTGACGCCCAGCGCGTGTTGCTGGACGCATTAAAACTGGCGAATCGCACCGGATTTATCAGCCATTTTGTCATCGAAGGCGAAGCGATGGCGCAACAACTGCGTCAGCTGATTCAGCTTAATACGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3555291‑3555446 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatacgctgcGCGCGATGCTGTTCCAGTTCCGGCAGCGTATTAAGCTGAATCAGCTGACGCAGTTGTTGCGCCATCGCTTCGCCTTCGATGACAAAATGGCTGATAAATCCGGTG  <  NC_000913/3555468‑3555364

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.