| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3555446 | 20 (0.580) | 4 (0.130) | 4/226 | 3.9 | 15.6% | coding (2362/2706 nt) | malT | mal regulon transcriptional activator |
| ? | NC_000913 | = 3555468 | 25 (0.790) | coding (2384/2706 nt) | malT | mal regulon transcriptional activator | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GACGCATTAAAACTGGCGAATCGCACCGGATTTATCAGCCATTTTGTCATCGAAGGCGAAGCGATGGCGCAACAACTGCGTCAGCTGATTCAGCTTAATACGCTGCCGGAACTGGAACAGCATCGCGCGCAGCGTATTCTGCGAGAAATCAATCAACATCATCGGCATAAATTCGCCCATTTCGATGAGAATTTCGTTGAACGTCTGCTAAATCATCCTGAAGTACCTGAACTGATCCGCACCAGCCCGCTGACGCAACGTGAATGGCAGGTACT > NC_000913/3555341‑3555615 | gACGCATTAAAACTGGCGAATCGCACCGGATTTATCAGCCATTTTGTCATCGAAGGCGAAGCGATGGCGCAACAACTGCGTCAGCTGATTCAGCTTAATACGCTGCCGGAACTGGAACAGCATCGCGCGCAGCGTATTCTGCGAGaa < 6:162653/147‑1 (MQ=255) aCGCATTAAAACTGGCGAATCGCACCGGATTTATCAGCCATTTTGTCATCGAAGGCGAAGCGATGGCGCAACAACTGCGTCAGCTGATTCAGCTTAATACGCTGCCGGAACTGGAACAGCATCGCGCGCAGCGTATTCTGCGAGAaatc < 2:174771/149‑1 (MQ=255) aaCTGGCGAATCGCACCGGATTTATCAGCCATTTTGTCATCGAAGGCGAAGCGATGGCGCAACAACTGCGTCAGCTGATTCAGCTTAATACGCTGCCGGAACTGGAACAGCATCGCGCGCAGCGTATTCTGCGAGAAATCAATCAAcat > 1:120541/1‑149 (MQ=255) cACCGGATTTATCAGCCATTTTGTCATCGAAGGCGAAGCGATGGCGCAACAACTGCGTCAGCTGATTCAGCTTAATACGCTGCCGGAACTGGAACAGCATCGCGCGCAGc < 8:17338/110‑1 (MQ=255) cACCGGATTTATCAGCCATTTTGTCATCGAAGGCGAAGCGATGGCGCAACAACTGCGTCAGCTGATTCAGCTTAATACGCTGCCGGAACTGGAACAGCATCGCGCGCAGc > 7:17338/1‑110 (MQ=255) aTCAGCCATTTTGTCATCGAAGGCGAAGCGATGGCGCAACAACTGCGTCAGCTGATTCAGCTTAATACGCTGCCGGAACTGGAACAGCATCGCGCGCAGCGTATTCTGCGAGAaatcaat > 1:17003/1‑120 (MQ=255) aTCAGCCATTTTGTCATCGAAGGCGAAGCGATGGCGCAACAACTGCGTCAGCTGATTCAGCTTAATACGCTGCCGGAACTGGAACAGCATCGCGCGCAGCGTATTCTGCGAGAaatcaat < 2:17003/120‑1 (MQ=255) aGCCATTTTGTCATCGAAGGCGAAGCGATGGCGCAACAACTGCGTCAGCTGATTCAGCTTAATACGCTGCCGGAACTGGAACAGCATCGCGCGCAGCGTATTCTGCGAGAAAtcaatcaa < 3:121192/120‑1 (MQ=255) aGCCATTTTGTCATCGAAGGCGAAGCGATGGCGCAACAACTGCGTCAGCTGATTCAGCTTAATACGCTGCCGGAACTGGAACAGCATCGCGCGCAGCGTATTCTGCGAGAAAtcaatcaa > 4:121192/1‑120 (MQ=255) gAAGCGATGGCGCAACAACTGCGTCAGCTGATTCAGCTTAATACGCTGCCGGAACTGGAACAGCATCGCGCGCAGCGTATTCTGCGAGAAATCAATCAACATCATCGGCATAAATTCGCCCATTTCGATGAGAATTTCGTTGAACGTCt < 2:120541/149‑1 (MQ=255) aacTGCGTCAGCTGATTCAGCTTAATACGCTGCCGGAACTGGAACAGCATCGCGCGCAGCGTATTCTGCGAGAAATCAATCAACATCATCGGCATAAATTCGCCCATTTCGATGAGAATTTCGTTGAACGTCt > 2:38251/1‑133 (MQ=255) aacTGCGTCAGCTGATTCAGCTTAATACGCTGCCGGAACTGGAACAGCATCGCGCGCAGCGTATTCTGCGAGAAATCAATCAACATCATCGGCATAAATTCGCCCATTTCGATGAGAATTTCGTTGAACGTCt < 1:38251/133‑1 (MQ=255) gATTCAGCTTAATACGCTGCCGGAACTGGAACAGCATCGCGCGCAGCGTATTCTGCGAGAAATCAATCAACATCATCGGCATAAATTCGCCCATTTCGATGAGAATTTCGTTGAAc < 2:188762/116‑1 (MQ=255) gATTCAGCTTAATACGCTGCCGGAACTGGAACAGCATCGCGCGCAGCGTATTCTGCGAGAAATCAATCAACATCATCGGCATAAATTCGCCCATTTCGATGAGAATTTCGTTGAAc > 1:188762/1‑116 (MQ=255) aaTACGCTGCCGGAACTGGAACAGCATCGCGCGCAGCGTATTCTGCGAGAAATCAATCAACATCATCGGCATAAATTCGCCCATTTCGATGAGAATTTCGTTGAACGTCTGCTAAATCATCCTGAAGTACCTGAACTGATCCGCACCAg > 3:44163/1‑149 (MQ=255) gCTGCCGGAACTGGAACAGCATCGCGCGCAGCGTATTCTg < 1:142873/40‑1 (MQ=255) gCTGCCGGAACTGGAACAGCATCGCGCGCAGCGTATTCTg > 2:142873/1‑40 (MQ=255) ggAACTGGAACAGCATCGCGCGCAGCGTATTCTGCGAGAAATCAATCAACATCATCGGCATAAATTCGCCCATTTCGATGAGAATTTCGTTGAACGTCTGCTAAATCATCCTGAAGTACCTGAAc < 5:40927/125‑1 (MQ=255) ggAACTGGAACAGCATCGCGCGCAGCGTATTCTGCGAGAAATCAATCAACATCATCGGCATAAATTCGCCCATTTCGATGAGAATTTCGTTGAACGTCTGCTAAATCATCCTGAAGTACCTGAAc > 6:40927/1‑125 (MQ=255) ggAACAGCATCGCGCGCAGCGTATTCTGCGAGAAATCAATCAACATCATCGGCATAAATTCGCCCATTTCGATGAGAATTTCGTTGAACGTCTGCTAAATCATCCTGAAGTACCTGAAc > 1:76878/1‑119 (MQ=255) ggAACAGCATCGCGCGCAGCGTATTCTGCGAGAAATCAATCAACATCATCGGCATAAATTCGCCCATTTCGATGAGAATTTCGTTGAACGTCTGCTAAATCATCCTGAAGTACCTGAAc < 2:76878/119‑1 (MQ=255) gAACAGCATCGCGCGCAGCGTATTCTGCGAGAAATCAATCAACATCATCGGCATAAATTCGCCCATTTCGATGAGAATTTCGTTGAACGTCTGCTAAATCATCCTGAAGTAc > 4:83310/1‑112 (MQ=255) gAACAGCATCGCGCGCAGCGTATTCTGCGAGAAATCAATCAACATCATCGGCATAAATTCGCCCATTTCGATGAGAATTTCGTTGAACGTCTGCTAAATCATCCTGAAGTACCTGAACTGATCCGCACCAGCCCGCTGACGCAACGTg > 6:20798/1‑148 (MQ=255) gCATCGCGCGCAGCGTATTCTGCGAGAAATCAATCAACATCATCGGCATAAATTCGCCCATTTCGATGAGAATTTCGTTGAACGTCTGCTAAATCATCCTGAAGTACCTGAACTGATCCGCACCAGCCCGCTGACGCAACGTGAATGGc < 4:44163/149‑1 (MQ=255) tCGCGCGCAGCGTATTCTGCGAGAAATCAATCAACATCATCGGCATAAATTCGCCCATTTCGATGAGAATTTCGTTGAACGTCTGCTAAATCATCCTGAAGTAc > 4:76037/1‑104 (MQ=255) tCGCGCGCAGCGTATTCTGCGAGAAATCAATCAACATCATCGGCATAAATTCGCCCATTTCGATGAGAATTTCGTTGAACGTCTGCTAAATCATCCTGAAGTAc < 3:76037/104‑1 (MQ=255) gcgcAGCGTATTCTGCGAGAAATCAATCAACATCATCGGCATAAATTCGCCCATTTCGATGAGAATTTCGTTGAACGTCTGCTAAATCATCCTGAAGTACCTGAACTGATCCGCACCAGCCCGCTGACGCAACGTGAATGGCAGGTACt > 5:16565/1‑149 (MQ=255) | GACGCATTAAAACTGGCGAATCGCACCGGATTTATCAGCCATTTTGTCATCGAAGGCGAAGCGATGGCGCAACAACTGCGTCAGCTGATTCAGCTTAATACGCTGCCGGAACTGGAACAGCATCGCGCGCAGCGTATTCTGCGAGAAATCAATCAACATCATCGGCATAAATTCGCCCATTTCGATGAGAATTTCGTTGAACGTCTGCTAAATCATCCTGAAGTACCTGAACTGATCCGCACCAGCCCGCTGACGCAACGTGAATGGCAGGTACT > NC_000913/3555341‑3555615 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |