New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 752877	59 (1.710)	4 (0.130)	4/226	3.7	7.8%	intergenic (‑82/+308)	ybgD/gltA	putative fimbrial‑like adhesin protein/citrate synthase
	?	NC_000913	= 752904	41 (1.300)					intergenic (‑109/+281)	ybgD/gltA	putative fimbrial‑like adhesin protein/citrate synthase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAACAGGTGCAGTGAACAGCAGAGATACGGCCAGTGCGGCCAATGTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTG  >  NC_000913/752732‑753021                                                                                                                                                  |                                                                                                                                                 aaaCAGGTGCAGTGAACAGCAGAGATACGGCCAGTGCGGCCAATGTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCtt                                                                                                                                                >  8:15886/1‑148 (MQ=255)   aCAGGTGCAGTGAACAGCAGAGATACGGCCAGTGCGGCCAATGTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTaa                                                                                                                                              >  2:91070/1‑148 (MQ=255)       gTGCAGTGAACAGCAGAGATACGGCCAGTGCGGCCAATGTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAata                                                                                                                                         <  7:15886/149‑1 (MQ=255)                    cagAGATACGGCCAGTGCGGCCAATGTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTaaaa                                                                                                                                            <  7:149053/133‑1 (MQ=255)                    cagAGATACGGCCAGTGCGGCCAATGTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTaaaa                                                                                                                                            >  8:149053/1‑133 (MQ=255)                     agagATACGGCCAGTGCGGCCAATGTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTttat                                                                                                                            >  8:5244/1‑148 (MQ=255)                        gaTACGGCCAGTGCGGCCAATGTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTaaa                                                                                                                        <  3:116732/149‑1 (MQ=255)                          tACGGCCAGTGCGGCCAATGTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATg                                                                                                                      >  1:161851/1‑149 (MQ=255)                               ccAGTGCGGCCAATGTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCaaaa                                                                                                                 <  2:161851/149‑1 (MQ=255)                                          aaTGTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTg                                                                                                      >  4:5357/1‑149 (MQ=255)                                          aaTGTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTg                                                                                                      <  1:91070/149‑1 (MQ=255)                                             gTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAattatt                                                                                                       <  1:67626/145‑1 (MQ=255)                                             gTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAattatt                                                                                                       >  2:67626/1‑145 (MQ=255)                                              ttttttGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTaa                                                                                                             <  4:49029/138‑1 (MQ=255)                                              ttttttGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTaa                                                                                                             >  3:49029/1‑138 (MQ=255)                                                ttttGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTaaa                                                                                                            >  1:140479/1‑137 (MQ=255)                                                ttttGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTaaa                                                                                                            <  2:140479/137‑1 (MQ=255)                                                        tttAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTtta                                                                                                                             >  6:72196/1‑112 (MQ=255)                                                        tttAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTtta                                                                                                                             <  5:72196/112‑1 (MQ=255)                                                               aTAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTtgttgt                                                                                    >  2:3214/1‑146 (MQ=255)                                                               aTAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTtgttgt                                                                                    <  1:3214/146‑1 (MQ=255)                                                                tAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCaaa                                                                                                                  <  4:154472/115‑1 (MQ=255)                                                                tAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCaaa                                                                                                                  >  3:154472/1‑115 (MQ=255)                                                                    agagTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATttgt                                                                                       <  2:177906/138‑1 (MQ=255)                                                                    agagTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATttgt                                                                                       >  1:177906/1‑138 (MQ=255)                                                                         ccTTTAAGGATATAGAATAGGTGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATaaaa                                                                       <  3:5357/149‑1 (MQ=255)                                                                          cTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATaaaa                                                                       >  5:97740/1‑148 (MQ=255)                                                                             tAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTttatt                                                                                                                           >  1:113021/1‑93 (MQ=255)                                                                             tAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTttatt                                                                                                                           <  2:113021/93‑1 (MQ=255)                                                                              aaGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAg                                                                  >  3:19559/1‑149 (MQ=255)                                                                                ggATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAggg                                                                <  4:19559/149‑1 (MQ=255)                                                                                 gATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAgggg                                                               <  7:5244/149‑1 (MQ=255)                                                                                  atatAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAggggg                                                              <  6:97740/149‑1 (MQ=255)                                                                                        aaTAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTTCTTAAAAATATTGTTAg                                                                                                                                  <  1:153430/75‑1 (MQ=255)                                                                                        aaTAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTTCTTAAAAATATTGTTAg                                                                                                                                  >  2:153430/1‑75 (MQ=255)                                                                                                tataGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGt                                                >  3:133886/1‑149 (MQ=255)                                                                                                     cTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCaaaa                                                                                                                 <  8:123602/79‑1 (MQ=255)                                                                                                     cTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCaaaa                                                                                                                 >  7:123602/1‑79 (MQ=255)                                                                                                      tACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATttgtt                                                                                      >  2:47857/1‑105 (MQ=255)                                                                                                      tACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATttgtt                                                                                      <  1:47857/105‑1 (MQ=255)                                                                                                      tACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCAtttt                                          >  2:150620/1‑149 (MQ=255)                                                                                                           cAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTg                                                                                                      >  5:122414/1‑84 (MQ=255)                                                                                                           cAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTg                                                                                                      <  6:122414/84‑1 (MQ=255)                                                                                                                 atCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATttgtt                                                                                      <  7:9711/94‑1 (MQ=255)                                                                                                                 atCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATttgtt                                                                                      >  8:9711/1‑94 (MQ=255)                                                                                                                     tATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTtgttgt                                                                                    >  4:12024/1‑92 (MQ=255)                                                                                                                     tATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTtgttgt                                                                                    <  3:12024/92‑1 (MQ=255)                                                                                                                                  cTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTataga                                                       <  2:165984/108‑1 (MQ=255)                                                                                                                                  cTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTataga                                                       >  1:165984/1‑108 (MQ=255)                                                                                                                                      tttttagttttGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAATATATAGGGGGGTATAGATAGACGTCATTTTCATAgg                                    >  7:119388/1‑123 (MQ=255)                                                                                                                                      tttttagttttGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAgg                                    <  8:119388/123‑1 (MQ=255)                                                                                                                                      tttttagttttGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGtt          >  5:177830/1‑149 (MQ=255)                                                                                                                                       ttttagttttGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTAc                   <  6:20527/139‑1 (MQ=255)                                                                                                                                       ttttagttttGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTAc                   >  5:20527/1‑139 (MQ=255)                                                                                                                                             ttttGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAgg                                    <  6:94068/116‑1 (MQ=255)                                                                                                                                             ttttGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAgg                                    >  5:94068/1‑116 (MQ=255)                                                                                                                                               ttGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTg  <  1:150620/148‑1 (MQ=255)                                                                                                                                                 gCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAg                                     <  7:27966/111‑1 (MQ=255)                                                                                                                                                 gCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAg                                     >  8:27966/1‑111 (MQ=255)                                                                                                                                                  |                                                                                                                                                 AAACAGGTGCAGTGAACAGCAGAGATACGGCCAGTGCGGCCAATGTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTG  >  NC_000913/752732‑753021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.