New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 752877	59 (1.710)	4 (0.130)	4/226	3.7	7.8%	intergenic (‑82/+308)	ybgD/gltA	putative fimbrial‑like adhesin protein/citrate synthase
	?	NC_000913	= 752904	41 (1.300)					intergenic (‑109/+281)	ybgD/gltA	putative fimbrial‑like adhesin protein/citrate synthase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TACGGCCAGTGCGGCCAATGTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTT  >  NC_000913/752757‑753045                                                                                                                                                    |                                                                                                                                              tACGGCCAGTGCGGCCAATGTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATg                                                                                                                                              >  1:161851/1‑149 (MQ=255)      ccAGTGCGGCCAATGTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCaaaa                                                                                                                                         <  2:161851/149‑1 (MQ=255)                 aaTGTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTg                                                                                                                              >  4:5357/1‑149 (MQ=255)                 aaTGTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTg                                                                                                                              <  1:91070/149‑1 (MQ=255)                    gTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAattatt                                                                                                                               >  2:67626/1‑145 (MQ=255)                    gTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAattatt                                                                                                                               <  1:67626/145‑1 (MQ=255)                     ttttttGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTaa                                                                                                                                     <  4:49029/138‑1 (MQ=255)                     ttttttGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTaa                                                                                                                                     >  3:49029/1‑138 (MQ=255)                       ttttGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTaaa                                                                                                                                    >  1:140479/1‑137 (MQ=255)                       ttttGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTaaa                                                                                                                                    <  2:140479/137‑1 (MQ=255)                                      aTAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTtgttgt                                                                                                            <  1:3214/146‑1 (MQ=255)                                      aTAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTtgttgt                                                                                                            >  2:3214/1‑146 (MQ=255)                                       tAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCaaa                                                                                                                                          <  4:154472/115‑1 (MQ=255)                                       tAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCaaa                                                                                                                                          >  3:154472/1‑115 (MQ=255)                                           agagTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATttgt                                                                                                               >  1:177906/1‑138 (MQ=255)                                           agagTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATttgt                                                                                                               <  2:177906/138‑1 (MQ=255)                                                ccTTTAAGGATATAGAATAGGTGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATaaaa                                                                                               <  3:5357/149‑1 (MQ=255)                                                 cTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATaaaa                                                                                               >  5:97740/1‑148 (MQ=255)                                                     aaGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAg                                                                                          >  3:19559/1‑149 (MQ=255)                                                       ggATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAggg                                                                                        <  4:19559/149‑1 (MQ=255)                                                        gATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAgggg                                                                                       <  7:5244/149‑1 (MQ=255)                                                         atatAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAggggg                                                                                      <  6:97740/149‑1 (MQ=255)                                                                       tataGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGt                                                                        >  3:133886/1‑149 (MQ=255)                                                                            cTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCaaaa                                                                                                                                         >  7:123602/1‑79 (MQ=255)                                                                            cTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCaaaa                                                                                                                                         <  8:123602/79‑1 (MQ=255)                                                                             tACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATttgtt                                                                                                              >  2:47857/1‑105 (MQ=255)                                                                             tACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATttgtt                                                                                                              <  1:47857/105‑1 (MQ=255)                                                                             tACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCAtttt                                                                  >  2:150620/1‑149 (MQ=255)                                                                                  cAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTg                                                                                                                              >  5:122414/1‑84 (MQ=255)                                                                                  cAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTg                                                                                                                              <  6:122414/84‑1 (MQ=255)                                                                                        atCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATttgtt                                                                                                              <  7:9711/94‑1 (MQ=255)                                                                                        atCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATttgtt                                                                                                              >  8:9711/1‑94 (MQ=255)                                                                                            tATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTtgttgt                                                                                                            >  4:12024/1‑92 (MQ=255)                                                                                            tATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTtgttgt                                                                                                            <  3:12024/92‑1 (MQ=255)                                                                                                         cTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTataga                                                                               >  1:165984/1‑108 (MQ=255)                                                                                                         cTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTataga                                                                               <  2:165984/108‑1 (MQ=255)                                                                                                             tttttagttttGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAATATATAGGGGGGTATAGATAGACGTCATTTTCATAgg                                                            >  7:119388/1‑123 (MQ=255)                                                                                                             tttttagttttGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAgg                                                            <  8:119388/123‑1 (MQ=255)                                                                                                             tttttagttttGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGtt                                  >  5:177830/1‑149 (MQ=255)                                                                                                              ttttagttttGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTAc                                           >  5:20527/1‑139 (MQ=255)                                                                                                              ttttagttttGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTAc                                           <  6:20527/139‑1 (MQ=255)                                                                                                                    ttttGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAgg                                                            <  6:94068/116‑1 (MQ=255)                                                                                                                    ttttGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAgg                                                            >  5:94068/1‑116 (MQ=255)                                                                                                                      ttGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTg                          <  1:150620/148‑1 (MQ=255)                                                                                                                        gCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAg                                                             <  7:27966/111‑1 (MQ=255)                                                                                                                        gCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAg                                                             >  8:27966/1‑111 (MQ=255)                                                                                                                               aaTATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATA‑GGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGa                         <  6:104068/139‑1 (MQ=255)                                                                                                                               aaTATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATA‑GGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGa                         >  5:104068/1‑139 (MQ=255)                                                                                                                                            ttattaAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAAtt   >  1:99273/1‑149 (MQ=255)                                                                                                                                              aataAATGCAAAACTAAATTATTGGTATCCTGAATTTGTTGTATGCTGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAAttt  <  4:133886/146‑1 (MQ=255)                                                                                                                                               ttaAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAAttt  >  3:108105/1‑147 (MQ=255)                                                                                                                                                    |                                                                                                                                              TACGGCCAGTGCGGCCAATGTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATTTGATTATTGCTAGTTTTTAGTTTTGCTTAAAAATATTGTTAGTTTTATTAAATGCAAAACTAAATTATTGGTATCATGAATTTGTTGTATGATGAATAAAATATAGGGGGGTATAGATAGACGTCATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTT  >  NC_000913/752757‑753045

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.