Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 982,486 Δ4 bp coding (1440‑1443/1848 nt) ldtD → murein L,D‑transpeptidase

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 982486 982489 4 94 [0] [0] 94 ldtD murein L,D‑transpeptidase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 9824850 (0.000)90 (0.900) 73/278 0.3 100% coding (1439/1848 nt) ldtD murein L,D‑transpeptidase
?NC_000913 982490 = 0 (0.000)coding (1444/1848 nt) ldtD murein L,D‑transpeptidase

ACGCAAAGATATTCTGCCAAAAGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACCACAATCTGTTCAAGCGTGATACACGCGCATTGAGCTCAGGCTGTGTA  >  NC_000913/982342‑982633
                                                                                                                                               |                                                                                                                                                    
aCGCAAAGATATTCTGCCAAAAGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgctt                                                                                                                                                 >  4:206062‑M1/1‑144 (MQ=255)
aCGCAAAGATATTCTGCCAAAAGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGGCTACAATCACGGCCTCGATTTTACCcgctt                                                                                                                                                 <  8:381798‑M1/149‑6 (MQ=255)
    aaaGATATTCTGCCAAAAGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGACCAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCagcttccag                                                                                                                                             >  5:310186‑M1/1‑140 (MQ=255)
     aaGATATTCTGCCAAAAGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagc                                                                                                                                            <  2:349105‑M1/149‑11 (MQ=255)
                ccAAAAGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccag                                                                                                                                   <  3:173313‑M1/147‑20 (MQ=255)
                  aaaaGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctcccggccc                                                                                                                               >  3:395560‑M1/1‑126 (MQ=255)
                  aaaaGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggccc                                                                                                                               >  5:261075‑M1/1‑126 (MQ=255)
                     aGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacg                                                                                                                            <  3:206062‑M1/149‑27 (MQ=255)
                       tGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccagtcccacgg                                                                                                                           >  6:411145‑M1/1‑121 (MQ=255)
                        gcgcAACGAGCCGGGATATCTCGACAGCCATGGCTATACGGGGCTGCGCGGCTGGAACCGCAGAGAAGCGATTGCCCCATGGCAGGGGGACTGGGCTACAATCACGCCCTCGAATTTACCcgcttccagcaggctccaggcccacggaa                                                                                                                         <  4:32913‑M1/149‑30 (MQ=255)
                           cAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactc                                                                                                                      >  1:391510‑M1/1‑117 (MQ=255)
                            aaCGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGCCTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcg                                                                                                                     >  6:384686‑M1/1‑116 (MQ=255)
                              cGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgct                                                                                                                   <  5:231433‑M1/149‑36 (MQ=255)
                                     ggATATCTCGAAAGTCATGGCTATACGGAGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCctcttccagcaggctccaggcccacggaactcgctggggcgc                                                                                                            <  8:239361‑M1/149‑43 (MQ=255)
                                        tatCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACACATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctat                                                                                                         <  2:365924‑M1/149‑46 (MQ=255)
                                           ctcGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaa                                                                                                      >  7:205027‑M1/1‑101 (MQ=255)
                                            tcGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaat                                                                                                     >  7:284389‑M1/1‑100 (MQ=255)
                                              gAAAGCCATGGCTATACGGTGATGCGCGGCTGTAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaat                                                                                                     <  1:188611‑M1/147‑50 (MQ=255)
                                              gAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattc                                                                                                   <  7:11569‑M1/149‑52 (MQ=255)
                                              gAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGGCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaa                                                                                                      <  5:346642‑M1/146‑49 (MQ=255)
                                               aaaGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattc                                                                                                   >  7:297686‑M1/1‑97 (MQ=255)
                                                   ccATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatat                                                                                              <  5:116821‑M1/149‑57 (MQ=255)
                                                     aTGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgc                                                                                            >  4:96793‑M1/1‑91 (MQ=255)
                                                      tGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgcc                                                                                           <  8:205027‑M1/149‑60 (MQ=255)
                                                        gCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacgtaactcgctggggctctataaattcaatatgccg                                                                                          <  2:199769‑M1/148‑61 (MQ=255)
                                                            taCGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagt                                                                                       <  8:270512‑M1/147‑64 (MQ=255)
                                                            taCGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagt                                                                                       <  8:277045‑M1/147‑64 (MQ=255)
                                                               ggTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcaga                                                                                  <  7:128125‑M1/149‑69 (MQ=255)
                                                               ggTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcaga                                                                                  <  7:131856‑M1/149‑69 (MQ=255)
                                                               ggTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCagcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcaga                                                                                  <  6:261075‑M1/149‑69 (MQ=255)
                                                                gTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagag                                                                                 <  2:309986‑M1/149‑70 (MQ=255)
                                                                gTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagag                                                                                 <  5:76782‑M1/149‑70 (MQ=255)
                                                                     gcgcGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattc                                                                                                   <  7:30986‑M1/126‑52 (MQ=255)
                                                                     gcgcGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattc                                                                                                   >  4:108480‑M1/1‑75 (MQ=255)
                                                                     gcgcGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattc                                                                                                   <  3:108480‑M1/126‑52 (MQ=255)
                                                                     gcgcGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattc                                                                                                   >  8:30986‑M1/1‑75 (MQ=255)
                                                                       gcgGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaa                                                                                                                         >  3:349543‑M1/1‑73 (MQ=255)
                                                                       gcgGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaa                                                                                                                         <  4:349543‑M1/102‑30 (MQ=255)
                                                                       gcgGCTGGAACAGCAGAGAAGCGATTGACCCATCGCAGGTTGACTGGTCTACAATCACGGACTCGAATTTACCcgcttccaccaggcaccatgcccacggaactcgctggggcgctataaattcaaaatgccgagtgcagaggccattt                                                                          <  5:411145‑M1/149‑77 (MQ=255)
                                                                         ggCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttat                                                                        >  2:113325‑M1/1‑71 (MQ=255)
                                                                           cTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttattt                                                                      <  1:113325‑M1/149‑81 (MQ=255)
                                                                              gAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaat                                                                                                <  1:275289‑M1/120‑55 (MQ=255)
                                                                              gAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaat                                                                                                >  2:275289‑M1/1‑66 (MQ=255)
                                                                                    cagAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacac                                                             >  1:377226‑M1/1‑60 (MQ=255)
                                                                                     agagAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacg                                                            <  8:284389‑M1/149‑91 (MQ=255)
                                                                                      gagaAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgc                                                           <  6:166556‑M1/149‑92 (MQ=255)
                                                                                      gagaAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatga                                                                <  6:50317‑M1/144‑87 (MQ=255)
                                                                                      gagaAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatga                                                                >  5:50317‑M1/1‑58 (MQ=255)
                                                                                      gagaAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccg                                                                                          <  8:421773‑M1/118‑61 (MQ=255)
                                                                                      gagaAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccg                                                                                          >  7:421773‑M1/1‑58 (MQ=255)
                                                                                       agaAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgcc                                                          >  5:24477‑M1/1‑57 (MQ=255)
                                                                                       agaAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatg                                                                                             >  4:337204‑M1/1‑57 (MQ=255)
                                                                                       agaAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatg                                                                                             <  3:337204‑M1/114‑58 (MQ=255)
                                                                                         aaGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccg                                                         >  4:263123‑M1/1‑55 (MQ=255)
                                                                                             gATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaacca                                                    <  2:377226‑M1/149‑99 (MQ=255)
                                                                                              aTTGACCCATGGCAGGTTTACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgc                                                                    <  3:381447‑M1/132‑83 (MQ=255)
                                                                                              aTTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgc                                                                    >  4:381447‑M1/1‑50 (MQ=255)
                                                                                               ttGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaac                                                      <  7:371825‑M1/145‑97 (MQ=255)
                                                                                               ttGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaac                                                      >  8:371825‑M1/1‑49 (MQ=255)
                                                                                               ttGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcataacacgccgaac                                                      >  2:80196‑M1/1‑49 (MQ=255)
                                                                                               ttGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcataacacgccgaac                                                      <  1:80196‑M1/145‑97 (MQ=255)
                                                                                                  aCCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatc                                               >  1:200704‑M1/1‑46 (MQ=255)
                                                                                                  aCCCATGCCATGTTTACTGGTCTACAATCACGGCCTCGAATTTACCcgcttcaatcagtctacaggcacactgaactcgctggggcgctataaattcaatatgactagttcagaggacatttatttgcatgacacgccgaaccacaat                                                <  6:310186‑M1/148‑103 (MQ=255)
                                                                                                   cccATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaa                                                                                                 <  2:133443‑M1/98‑54 (MQ=255)
                                                                                                   cccATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaa                                                                                                 >  1:133443‑M1/1‑45 (MQ=255)
                                                                                                    ccATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatctg                                             >  2:328765‑M1/1‑44 (MQ=255)
                                                                                                       tGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgcgggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttc                                          <  2:343662‑M1/149‑109 (MQ=255)
                                                                                                                gACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccatgcccacggaactcgctggggcgctataaattctatatgcctagttcagaggccatttattttcatgacacgccgaaccacaatctgttcaagcgtga                                  <  1:396139‑M1/148‑117 (MQ=255)
                                                                                                                gACTGGTCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttcaagcgtga                                  >  3:232203‑M1/1‑32 (MQ=255)
                                                                                                                      tCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttcaagcgtgatacacgc                           <  3:96793‑M1/149‑124 (MQ=255)
                                                                                                                      tCTACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttcaagcgtgatacacgc                           >  6:169801‑M1/1‑26 (MQ=255)
                                                                                                                        tACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatct                                              <  8:92536‑M1/128‑105 (MQ=255)
                                                                                                                        tACAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatct                                              >  7:92536‑M1/1‑24 (MQ=255)
                                                                                                                         aCAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttcaagcgtgatacacgcgca                        >  4:18250‑M1/1‑23 (MQ=255)
                                                                                                                         aCAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttcaag                                       <  5:233590‑M1/134‑112 (MQ=255)
                                                                                                                         aCAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaagctgttcaag                                       >  6:233590‑M1/1‑23 (MQ=255)
                                                                                                                          cAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagcggccatttatttgcatgacacgccgaaccacaatctgttcaagcgtgatacacgcgcat                       >  5:344341‑M1/1‑22 (MQ=255)
                                                                                                                          cAATCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttcaagcgtgatacacgcgca                        <  1:328765‑M1/148‑127 (MQ=255)
                                                                                                                           aaTCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttcaagcgtgatacacgcgcatt                      >  1:208303‑M1/1‑21 (MQ=255)
                                                                                                                             tCACGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttcaagcgtgatacacgcgcattga                    <  5:384686‑M1/149‑131 (MQ=255)
                                                                                                                                cGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttca                                         <  6:385547‑M1/125‑110 (MQ=255)
                                                                                                                                cGGCCTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttca                                         >  5:385547‑M1/1‑16 (MQ=255)
                                                                                                                                   ccTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttcaagcgtgatacacgcgcattgagctcag              >  5:43671‑M1/1‑13 (MQ=255)
                                                                                                                                   ccTCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttcaagcgtgatacacgcgcattgagctcag              >  2:64385‑M1/1‑13 (MQ=255)
                                                                                                                                     tCGAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttcaagcgtgatacacgcgcattgagctcaggc            >  5:205825‑M1/1‑11 (MQ=255)
                                                                                                                                       gAATTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttcaagcgtgatacacgcgcattgagctcaggctg          <  6:43671‑M1/149‑141 (MQ=255)
                                                                                                                                        aaTTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttcaagcgtgatacacgcgcattgagctcaggctgt         >  4:117949‑M1/1‑8 (MQ=255)
                                                                                                                                         aTTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgccacgccgaaccacaatctgttcaagcgtgatacacgcgcattgagctcaggctgtg        >  1:205308‑M1/1‑7 (MQ=255)
                                                                                                                                         aTTTACCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttcaagcgtgatacacgcgcattgagctcaggctgtg        >  2:189920‑M1/1‑7 (MQ=255)
                                                                                                                                             aCCcgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttcaagcgtgatacacgcgcattgagctcaggctgtgtac     <  3:18250‑M1/148‑146 (MQ=255)
                                                                                                                                               ccgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttcacgcgtgatac                               >  6:341031‑M1/1‑1 (MQ=255)
                                                                                                                                               ccgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttcaagcgtgatacacgcgcattgagctcaggctgtgtacgag  >  3:36285‑M1/1‑1 (MQ=255)
                                                                                                                                               ccgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttcaagcgtgatacacgcgcattgagctcaggctgtgtacgag  >  6:6520‑M1/1‑1 (MQ=255)
                                                                                                                                               ccgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatgccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttcaagcgtgatac                               <  5:341031‑M1/120‑120 (MQ=255)
                                                                                                                                               |                                                                                                                                                    
ACGCAAAGATATTCTGCCAAAAGTGCGCAACGATCCGGGATATCTCGAAAGCCATGGCTATACGGTGATGCGCGGCTGGAACAGCAGAGAAGCGATTGACCCATGGCAGGTTGACTGGTCTACAATCACGGCCTCGAATTTACCGTTCCGCTTCCAGCAGGCTCCAGGCCCACGGAACTCGCTGGGGCGCTATAAATTCAATATGCCGAGTTCAGAGGCCATTTATTTGCATGACACGCCGAACCACAATCTGTTCAAGCGTGATACACGCGCATTGAGCTCAGGCTGTGTA  >  NC_000913/982342‑982633

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: