mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 14 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4633440 = | 101 (1.210) | 4 (0.050) | 4/252 | NT | 4.0% | coding (306/513 nt) | yjjX | non‑canonical purine NTP phosphatase, ITPase/XTPase |
| ? | NC_000913 | 4633467 = | 95 (1.180) | coding (279/513 nt) | yjjX | non‑canonical purine NTP phosphatase, ITPase/XTPase | |||||
| * | ? | NC_000913 | 4621634 = | 108 (1.300) | 4 (0.050) | 4/240 | NT | 4.2% | intergenic (+32/‑135) | deoD/yjjJ | purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase |
| ? | NC_000913 | 4621662 = | 83 (1.080) | intergenic (+60/‑107) | deoD/yjjJ | purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase | |||||
| * | ? | NC_000913 | = 4168341 | 63 (0.760) | 4 (0.050) | 3/240 | NT | 7.3% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | 43 (0.560) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | = 4064658 | 117 (1.400) | 4 (0.050) | 4/242 | NT | 3.3% | coding (1109/1404 nt) | yihO | putative sulphoquinovose importer |
| ? | NC_000913 | = 4064678 | 125 (1.610) | coding (1089/1404 nt) | yihO | putative sulphoquinovose importer | |||||
| * | ? | NC_000913 | 3982351 = | 105 (1.260) | 3 (0.040) | 3/248 | NT | 2.8% | intergenic (+79/‑24) | yifK/argX | putative APC family amino acid transporter/tRNA‑Arg |
| ? | NC_000913 | 3982397 = | 112 (1.410) | noncoding (23/77 nt) | argX | tRNA‑Arg | |||||
| * | ? | NC_000913 | 3496884 = | 74 (0.890) | 3 (0.040) | 3/256 | NT | 3.8% | intergenic (+7/‑119) | nirD/nirC | nitrite reductase (NADH) small subunit/nitrite transporter |
| ? | NC_000913 | 3496909 = | 80 (0.980) | intergenic (+32/‑94) | nirD/nirC | nitrite reductase (NADH) small subunit/nitrite transporter | |||||
| * | ? | NC_000913 | = 2809379 | 112 (1.340) | 3 (0.040) | 3/250 | NT | 2.8% | pseudogene (810/924 nt) | ygaY | pseudogene, major facilitator transporter superfamily;putative transport; Not classified; putative transport protein |
| ? | NC_000913 | = 2809402 | 101 (1.260) | pseudogene (833/924 nt) | ygaY | pseudogene, major facilitator transporter superfamily;putative transport; Not classified; putative transport protein | |||||
| * | ? | NC_000913 | 2729443 = | 34 (0.410) | 4 (0.050) | 3/240 | NT | 8.1% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | = 4168331 | 59 (0.770) | intergenic (+131/‑41) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 2231929 = | 91 (1.090) | 4 (0.050) | 4/248 | NT | 4.5% | coding (86/885 nt) | cdd | cytidine/deoxycytidine deaminase |
| ? | NC_000913 | 2231951 = | 83 (1.050) | coding (108/885 nt) | cdd | cytidine/deoxycytidine deaminase | |||||
| * | ? | NC_000913 | = 1976781 | 68 (0.820) | 3 (0.040) | 3/252 | NT | 4.1% | coding (359/888 nt) | motA | proton conductor component of flagella motor |
| ? | NC_000913 | = 1976794 | 73 (0.900) | coding (346/888 nt) | motA | proton conductor component of flagella motor | |||||