New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3033617 =35 (1.090)4 (0.130) 5/244 2.9 11.9% intergenic (+4/+40) idi/lysS isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive
?NC_000913 3033639 = 26 (0.860)intergenic (+26/+18) idi/lysS isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive
Rejected: Frequency below/above cutoff threshold.

GCCGACAGCAGGTCTGGGAATTGGTATCGACCGTATGGTAATGCTGTTCACCAACAGCCATACCATCCGCGACGTTATTCTGTTCCCGGCGATGCGTCCGGTAAAATAAGCATTACGTTATGCTCACAACCCCGGCAAATGTCGGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3033765‑3033617
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggggttGTGAGCATAACGTAATGCTTATTTTACCGGAC  >  NC_000913/3033639‑3033670
                                                                                                                                                                                     
GCCGACAGCAGGGCTGGGAATTGGTATCGACCGTATGGTAATGCTGGTCCCCAACAGCCATACCATCCGCGACGTTATTCTGTTCCCGGCGAGGCGTCCGGTAAAATAAGCATTACGTTATGCTCACAACCCCGACATTTGCCGGGGTT                                  <  3:27295/149‑1
                       GTATCGACCGTATGGTAATGCTGTTCACCAACAGCCATGCCATCCGCGACGTTATTCTGTTCCCGGCGATGCGTCCGGTAAAATAAGCATTACGTTATGCTCACAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTATT           >  7:71334/1‑149
                               CGTATGGTAATGCTGTTCACCAACAGCCATACCATCCGCGACGTTATTCTGTTCCCGGCGATGCGTCCGGTAAAATAAGCATTACGTTATGCTCACAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTATTTTACCGGA   <  8:71334/149‑1
                                                                    GCGACGTTATTCTGTTCCCGGCGATGCGTCCGGTAAAATAAGCATTACGTTATGCTCACAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTATTTTACCGGAC  >  1:144518/1‑113
                                                                    GCGACGTTATTCTGTTCCCGGCGATGCGTCCGGTAAAATAAGCATTACGTTATGCTCACAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTATTTTACCGGAC  <  2:144518/113‑1
                                                                                                                                                                                     
GCCGACAGCAGGTCTGGGAATTGGTATCGACCGTATGGTAATGCTGTTCACCAACAGCCATACCATCCGCGACGTTATTCTGTTCCCGGCGATGCGTCCGGTAAAATAAGCATTACGTTATGCTCACAACCCCGGCAAATGTCGGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3033765‑3033617
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggggttGTGAGCATAACGTAATGCTTATTTTACCGGAC  >  NC_000913/3033639‑3033670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.