New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3033617 =35 (1.090)4 (0.130) 5/244 2.9 11.9% intergenic (+4/+40) idi/lysS isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive
?NC_000913 3033639 = 26 (0.860)intergenic (+26/+18) idi/lysS isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive
Rejected: Frequency below/above cutoff threshold.

TAGCAGATGTATTACACGGTATTGATGCCACGCCGTGGGCGTTCAGTCCGTGGATGGTGATGCAGGCGACAAATCGCGAAGCCAGAAAACGATTATCTGCATTTACCCAGCTTAAATAAAAAAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTATTTTACCGGACGCATCGCCGGGAACAGAATAACGTCGCGGATGGTATGGCTGTTGGTGAACAGCATTACCATACGGTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTC  >  NC_000913/3033495‑3033779
                                                                                                                                                |                                                                                                                                            
tAGCAGATGTATTACACGGTATTGATGCCACGCCGTGGGCGTTCAGTCCGTGGATGGTGATGCAGGCGACAAATCGCGAAGCCAGAAAACGATTATCAGCATTTACCCAGCTTAAATAAAAAAACCCCGACATTTGCCGGGGTTGTGa                                                                                                                                           <  1:114348/148‑1 (MQ=255)
              cacGGTATTGATGCCACGCCGTGGGCGTTCAGTCCGTGGATGGTGATGCAGGCGACAAATCGCGAAGCCAGAAAACGATTATCTGCATTTACCCAGCTTAAATAAAAAAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCt                                                                                                                            >  4:53420/1‑149 (MQ=255)
                cGGTATTGATGCCACGCCGTGGGCGTTCAGTCCGTGGATGGTGATGCAGGCGACAAATCGCGAAGCCAGAAAACGATTATCTGCATTTACCCAGCTTAAATAAAAAAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTa                                                                                                                          >  1:15410/1‑149 (MQ=255)
                  gtatcgaccgtatggtaatgctgttcaccaacagccatgccatccgcgacgttattctgttcccggcgatgcgtccggtaaaataagcattacgttatgctcacaaccccgacatttgccggggttGTGAGCATAACGTAATGCTTAtt                                                                                                                        >  7:71334‑M2/127‑149 (MQ=255)
                       gATGCCACGCCGTGGGCGTTCAGTCCGTGGATGGTGATGCAGGCGACAAATCGCGAAGCCAGAAAACGATTATCTGCATTTACCCAGCTTAAATAAAAAAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTATTTTAc                                                                                                                    <  6:93789/148‑1 (MQ=255)
                       gATGCCACGCCGTGGGCGTTCAGTCCGTGGATGGTGATGCAGGCGACAAATCGCGAAGCCAGAAAACGATTATCTGCATTTACCCAGCTTAAATAAAAAAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTATTTTAc                                                                                                                    >  5:93789/1‑148 (MQ=255)
                          cgtatggtaatgctgttcaccaacagccataccatccgcgacgttattctgttcccggcgatgcgtccggtaaaataagcattacgttatgctcacaaccccgacatttgccggggttGTGAGCATAACGTAATGCTTATTTTACCGGa                                                                                                                <  8:71334‑M2/31‑1 (MQ=255)
                           ccACGCCGTGGGCGTTCAGTCCGTGGATGGTGATGCAGGCGACAAATCGCGAAGCCAGAAAACGATTATCTGCATTTACCCAGCTTAAATAAAAAAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTATTTTACCGGa                                                                                                                <  2:15410/148‑1 (MQ=255)
                             aCGTCGTGGGCGTTCAGTCCGTGGATGGTGATGCAGGCGACAAATCGCGAAGCCAGAAAACGATTATCTGCATTTACCCAGCTTAAATAAAAAAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTATTTTAc                                                                                                                    >  2:104556/1‑142 (MQ=255)
                             aCGTCGTGGGCGTTCAGTCCGTGGATGGTGATGCAGGCGACAAATCGCGAAGCCAGAAAACGATTATCTGCATTTACCCAGCTTAAATAAAAAAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTATTTTAc                                                                                                                    <  1:104556/142‑1 (MQ=255)
                                             gTCCGTGGATGGTGATGCAGGCGACAAATCGCGAAGCCAGAAAACGATTATCTGCATTTACCCAGCTTAAATAAAAAAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTATTTTACCGGACGCATCGCCGGGAAAAGaa                                                                                             <  6:2315/149‑1 (MQ=255)
                                                  tGGATGGTGATGCAGGCGACAAATCGCGAAGCCAGAAAACGATTATCTGCATTTACCCAGCTTAAATAAAAAAACCCCGACATTTGCCGGGGTTGTGa                                                                                                                                           >  3:70450/1‑98 (MQ=255)
                                                  tGGATGGTGATGCAGGCGACAAATCGCGAAGCCAGAAAACGATTATCTGCATTTACCCAGCTTAAATAAAAAAACCCCGACATTTGCCGGGGTTGTGa                                                                                                                                           <  4:70450/98‑1 (MQ=255)
                                                       ggTGATGCAGGCGACAAATCGCGAAGCCAGAAAACGATTATCTGCATTTACCCAGCTTAAATAAAACAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTATTTTACCGGACGCAGCGCCGGGAACAGAATAACGTcgcg                                                                                   <  3:53420/149‑1 (MQ=255)
                                                         tGATGCAGGCGACAAATCGCGAAGCCAGAAAACGATTATCTGCATTTACCCAGCTTAAATAAAAAAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTATTTTACCGGACGCATCGCCGGGAACAGAATAACGTCGCGGa                                                                                 <  2:17884/149‑1 (MQ=255)
                                                               gcgacgttattctgttcccggcgatgcgtccggtaaaataagcattacgttatgctcacaaccccgacatttgccggggttGTGAGCATAACGTAATGCTTATTTTACCGGAc                                                                                                               <  2:144518‑M2/32‑1 (MQ=255)
                                                               gcgacgttattctgttcccggcgatgcgtccggtaaaataagcattacgttatgctcacaaccccgacatttgccggggttGTGAGCATAACGTAATGCTTATTTTACCGGAc                                                                                                               >  1:144518‑M2/82‑113 (MQ=255)
                                                                      gaaTCGCGAAGCCAGAAAACGATTATCTGCATTTACCCAGCTTAAATAAAAAAACCCCGACATTTGCCGGGGTtgtg                                                                                                                                            <  4:100104/76‑1 (MQ=255)
                                                                      aaaTCGCGAAGCCAGAAAACGATTATCTGCATTTACCCAGCTTAAATAAAAAAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTATTTTACCGGACGCATCGCCGGGAACAGAATAACGTCGCGGATGGTATg                                                                          <  6:84463/143‑1 (MQ=255)
                                                                      aaaTCGCGAAGCCAGAAAACGATTATCTGCATTTACCCAGCTTAAATAAAAAAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTATTTTACCGGACGCATCGCCGGGAACAGAATAACGTCGCGGATGGTATg                                                                          >  5:84463/1‑143 (MQ=255)
                                                                                          gtccggtaaaataagcattacgttatgctcacAACCCCGGCAAATGTCGGGGTTGTGAGCATAACGTAATGCTTATTTTACCGGACGCATCGCCGGGAACAGAATAACGTcgc                                                                                    <  2:144518‑M1/81‑1 (MQ=255)
                                                                                          gtccggtaaaataagcattacgttatgctcacAACCCCGGCAAATGTCGGGGTTGTGAGCATAACGTAATGCTTATTTTACCGGACGCATCGCCGGGAACAGAATAACGTcgc                                                                                    >  1:144518‑M1/33‑113 (MQ=255)
                                                                                           tccggtaaaataagcattacgttatgctcacAACCCCGGCAAATGTCGGGGTTGTGAGCATAACGTAATGCTTATTTTACCGGACGCATCGCCGGGAACAGAATAACGTCGCGGATGGTATGGCTGTTGGTGAACAGCATTACCATACg                                               <  8:71334‑M1/118‑1 (MQ=255)
                                                                                               tCTGCATTTACCCAGCTTAAATAAAAAAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTATTTTACCGGACGCATCGCCGGGAACAGAATAACGTCGCGGATGGTATGGCTGTTGGTGAACa                                                            >  1:73290/1‑132 (MQ=255)
                                                                                               tCTGCATTTACCCAGCTTAAATAAAAAAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTATTTTACCGGACGCATCGCCGGGAACAGAATAACGTCGCGGATGGTATGGCTGTTGGTGAACa                                                            <  2:73290/132‑1 (MQ=255)
                                                                                                   aataagcattacgttatgctcacAACCCCGGCAAATGTCGGGGTTGTGAGCATAACGTAATGCTTATTTTACCGGACGCATCGCCGGGAACAGAATAACGTCGCGGATGGCATGGCTGTTGGTGAACAGCATTACCATACGGTCGATAc                                       >  7:71334‑M1/24‑149 (MQ=255)
                                                                                                             gCTTAAATAAAAAAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTATTTTACCGGACGCATCGCCGGGAACAGAATAACGTCGCGGATGGTATGGCTGTTGGTGAACAGCATTACCATACg                                               <  5:111691/131‑1 (MQ=255)
                                                                                                             gCTTAAATAAAAAAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTATTTTACCGGACGCATCGCCGGGAACAGAATAACGTCGCGGATGGTATGGCTGTTGGTGAACAGCATTACCATACg                                               >  6:111691/1‑131 (MQ=255)
                                                                                                                  aataaaAAAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTATTTTACCTGACGCATCGCCGGGAACAGAATAACGTCGCGGATGGTATGGCTGt                                                                     >  4:95363/1‑104 (MQ=255)
                                                                                                                  aataaaAAAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTATTTTACCTGACGCATCGCCGGGAACAGAATAACGTCGCGGATGGTATGGCTGt                                                                     <  3:95363/104‑1 (MQ=255)
                                                                                                                  aataaaAAAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTATTTTACCGGACGCATCGCCGGGAACAGAATAACGTCGCGGATGGTATGGCTGTTGGTGAACAGCATTACCATACGGTCGATACCAATTCCCAGACctg                        >  3:30282/1‑149 (MQ=255)
                                                                                                                     aaaaaaaCCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTTTTTTACCGGACGCATCGCCGGGAACAGAATAACGTCGCGGATg                                                                               <  1:59171/91‑1 (MQ=255)
                                                                                                                     aaaaaaaCCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTTTTTTACCGGACGCATCGCCGGGAACAGAATAACGTCGCGGATg                                                                               >  2:59171/1‑91 (MQ=255)
                                                                                                                          AACCCCGGCAAATGTCGGGGTTGTGAGCATAACGTAATGCTTATTTTACCGGACGCCTCGCCGGGAACAGAATAACGTCGCGGATGGTATGGCTGTTGGGGACCAGCATTACCATACGGTCGATACCAATTCCCAGCCCTGCTGTcggc                <  3:27295‑M1/149‑1 (MQ=255)
                                                                                                                                        ccGGGGTTGTGAGCATAACGTAATGCTTATTTTACCGGACGCATCGCCGGGAACAGAATAACGTCGCGGATGGTATGGCTGTTGGTGAACAGCATTACCATACGGTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTc  <  4:30282/149‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                            
TAGCAGATGTATTACACGGTATTGATGCCACGCCGTGGGCGTTCAGTCCGTGGATGGTGATGCAGGCGACAAATCGCGAAGCCAGAAAACGATTATCTGCATTTACCCAGCTTAAATAAAAAAACCCCGACATTTGCCGGGGTTGTGAGCATAACGTAATGCTTATTTTACCGGACGCATCGCCGGGAACAGAATAACGTCGCGGATGGTATGGCTGTTGGTGAACAGCATTACCATACGGTCGATACCAATTCCCAGACCTGCTGTCGGCGGTAAGCCATGTTC  >  NC_000913/3033495‑3033779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.