New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3805341 =62 (1.940)5 (0.160) 5/254 3.0 8.1% coding (610/798 nt) waaP kinase that phosphorylates core heptose of lipopolysaccharide
?NC_000913 3805362 = 52 (1.650)coding (589/798 nt) waaP kinase that phosphorylates core heptose of lipopolysaccharide
Rejected: Frequency below/above cutoff threshold.

GATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCTTCATTTGCCATTTACTGGCCGGGAAGATGAATTAAAAATTTCAGTTATCGATCTGCATCGGGCACAGATACGTGCAAAAGTACCGCGCCGCTGGCGCGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3805480‑3805341
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taCTTTTGCACGTATCTGT  >  NC_000913/3805362‑3805378
                                                                                                                                                             
GATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCTTCATTTGCCATTTACTGGCCGGGAAGATGAATTAAAAATTTCAGTTATCGATCTGCATCGGGCACAGATACGTGCAAAAGTACCGCGCCAGCGGCGCGGTACTTTTGCAC          <  1:16931/149‑1
                       TTTGCCACTTTTTGCTTCATTTGCCATTTACTGGCCGGGAAGATGAATTAAAAATTTCAGTTATCGATCTGCATCGGGCACAGATACGTGCAAAAGTACCGCGCCGCTGGCGCGATA                   <  1:100281/117‑1
                       TTTGCCACTTTTTGCTTCATTTGCCATTTACTGGCCGGGAAGATGAATTAAAAATTTCAGTTATCGATCTGCATCGGGCACAGATACGTGCAAAAGTACCGCGCCGCTGGCGCGATA                   >  2:100281/1‑117
                                         ATTTGCCATTTACTGGCCGGGAAGATGAATTAAAAATTTCAGTTATCGATCTGCATCGGGCACAGATACGTGCAAAAGTATCGCGCCAGCGGCGCGGTACTTTTGCACGTATCTGT  <  5:139209/116‑1
                                         ATTTGCCATTTACTGGCCGGGAAGATGAATTAAAAATTTCAGTTATCGATCTGCATCGGGCACAGATACGTGCAAAAGTATCGCGCCAGCGGCGCGGTACTTTTGCACGTATCTGT  >  6:139209/1‑116
                                                                      TTAAAAATTTCAGTTATCGATCTGCATCGGGCACAGATACGTGCAAAAGTATCGCGCCAGCGGCGCGGTACTTT               <  1:85798/74‑1
                                                                      TTAAAAATTTCAGTTATCGATCTGCATCGGGCACAGATACGTGCAAAAGTATCGCGCCAGCGGCGCGGTACTTT               >  2:85798/1‑74
                                                                                                                                                             
GATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCTTCATTTGCCATTTACTGGCCGGGAAGATGAATTAAAAATTTCAGTTATCGATCTGCATCGGGCACAGATACGTGCAAAAGTACCGCGCCGCTGGCGCGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3805480‑3805341
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taCTTTTGCACGTATCTGT  >  NC_000913/3805362‑3805378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.