New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3045123	NA (NA)	2 (0.030)	3/242	NT	NA	noncoding (11/28 nt)	REP211 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP211 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 3045129	NA (NA)					noncoding (17/28 nt)	REP211 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP211 (repetitive extragenic palindromic) element; contains 1 REP sequences

GGGCAGTACAGCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3044967‑3045123 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accggatgcaaCAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGATAAAGCCGTAGCG  <  NC_000913/3045129‑3044982                                                                                                                                                                                                                                                                                                                   GGGCAGTACAGCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACC                                                                                                                                                              <  8:292008/149‑1    CAGTACAGCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGA                                                                                                                                                           <  8:339774/149‑1      GTACAGCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATG                                                                                                                                                         <  5:268033/149‑1      GTACAGCAAACGCTACGGCGTTATCTATGTGAATACACATGACGACGGTACTGGCGATATGGCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATG                                                                                                                                                         <  5:341042/149‑1       TACAGCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGC                                                                                                                                                        <  3:15733/149‑1        ACAGCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGC                                                                                                                                                        >  2:65918/1‑148         CAGCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCAA                                                                                                                                                      >  4:86796/1‑149          AGCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCAA                                                                                                                                                      >  7:6544/1‑148                               TATGTGAATAAACATGACGACGGTACTGTCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGA                                                                                                                                                           <  6:252348/122‑1                               TATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGA                                                                                                                                                           >  5:252348/1‑122                                                                                                                                 GCTTTAAGTCGATGAAGTACCGGATGCAATACTTGTTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCAC                                                                                            >  1:21934/1‑87                                                                                                                                 GCTTTAAGTCGATGAAGTACCGGATGCAATACTTGTTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCAC                                                                                            <  2:21934/87‑1                                                                                                                                                   ACCGGATGCAACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGATAA            <  6:120738/149‑1                                                                                                                                                   ACCGGATGCAACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGAT              <  5:381480/147‑1                                                                                                                                                   ACCGGATGCAACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGT                                                                                    <  5:36844/77‑1                                                                                                                                                   ACCGGATGCAACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGT                                                                                    >  6:36844/1‑77                                                                                                                                                    CCGGATGCAACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGATAAA           <  8:139209/149‑1                                                                                                                                                    CCGGATGCAACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGATA             >  5:46366/1‑147                                                                                                                                                     CGGATGCAACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGATAAAG          >  7:13453/1‑149                                                                                                                                                       GATGCAATACTTGTTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGATAAAGCC        >  1:6802/1‑149                                                                                                                                                            AACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGATAAAGCCGTAGC   >  8:6544/1‑149                                                                                                                                                            AACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGATAAAGCCGTAGC   >  6:226758/1‑149                                                                                                                                                            AACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGATAAAGCCGTAGC   >  4:145062/1‑149                                                                                                                                                            AACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGATAAAGCCGTAGC   >  1:33669/1‑149                                                                                                                                                            AACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTG                                                                                                    <  6:14552/52‑1                                                                                                                                                            AACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTG                                                                                                    >  5:14552/1‑52                                                                                                                                                             ACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGATAAAGCCGTAGCG  >  1:65918/1‑149                                                                                                                                                                                                                                                                                                                   GGGCAGTACAGCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3044967‑3045123 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accggatgcaaCAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGATAAAGCCGTAGCG  <  NC_000913/3045129‑3044982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.