New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2125439 =52 (0.600)3 (0.040) 3/260 NT 5.3% coding (308/1224 nt) wcaI putative glycosyl transferase
?NC_000913 2125444 = 55 (0.640)coding (303/1224 nt) wcaI putative glycosyl transferase

CGGCAAGGCCCAGCCCCAGCATGGCGTCCACTTCGTAATCCTGAATATGCAGCACGGTACGCGCACCAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCGGGCAGCGCCACACCGTGGCGGCCCCCTCTTCTCGTTTGTAGCGCCAGGC  >  NC_000913/2125293‑2125584
                                                                                                                                                  |                                                                                                                                                 
cGGCAAGGCCCAGCCCCAGCATGGCGTCCACTTCGTAATCCTGAATATGCAGCACGGTACGCGCACCAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGa                                                                                                                                                 <  1:373352/149‑1 (MQ=255)
 ggCAAGGCCCAGCCCCAGCATGGCGTCCACTTCGTAATCCTGAATATGCAGCACGGTACGCGCACCAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGAc                                                                                                                                                <  8:194731/149‑1 (MQ=255)
         ccagccccagcATGGCGTCCACTTCGTAATCCTGAATATGCAGCACGGTACGCGCACCAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTgcgc                                                                                                                                         >  8:65536/1‑148 (MQ=255)
          cagccccagcATGGCGTCCACTTCGTAATCCTGAATATGCAGCACGGTACGCGCACCAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCa                                                                                                                                       <  8:259986/149‑1 (MQ=255)
             ccccagcATGGCGTCCACTTCGTAATCCTGAATATGCAGCACGGTACGCGCACCAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCa                                                                                                                                    <  7:141797/149‑1 (MQ=255)
                    aTGGCGTCCACTTCGTAATCCTGAATATGCAGCACGGTACGCGCACCAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGgaaa                                                                                                                             <  3:325639/149‑1 (MQ=255)
                               ttCGTAATCCTGAATATGCAGCACGGTACGCGCACCAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGa                                                                                                                  >  2:41119/1‑149 (MQ=255)
                                   tAATCCTGAATATGCAGCACGGTACGCGCACCAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACgg                                                                                                               >  7:134238/1‑148 (MQ=255)
                                    aaTCCTGAATATGCAGCACGGTACGCGCACCAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGc                                                                                                              >  6:12347/1‑148 (MQ=255)
                                           aaTATGCAGCACGGTACGCGCACCAGAGAGTTTCGCCAGCAGTCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGc                                                                                                      <  3:65580/149‑1 (MQ=255)
                                             tatGCAGCACGGTACGCGCACCAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGcc                                                                                                     >  4:272305/1‑148 (MQ=255)
                                               tGCAGCACGGTACGCGCACCAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCa                                                                                                   <  3:141485/148‑1 (MQ=255)
                                                 cagcaCGGTACGCGCACCAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGa                                                                                                 <  8:134238/148‑1 (MQ=255)
                                                  agcaCGGTACGCGCACCAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAActgct                                                                                                                    >  4:37973/1‑128 (MQ=255)
                                                  agcaCGGTACGCGCACCAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAActgct                                                                                                                    <  3:37973/128‑1 (MQ=255)
                                                  agcaCGGTACGCGCACCAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATg                                                                                               >  2:238277/1‑149 (MQ=255)
                                                   gcaCGGTACGCGCACCAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGc                                                                                              <  5:12347/149‑1 (MQ=255)
                                                           cgcgCACCAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGccc                                                                                                    >  4:367039/1‑135 (MQ=255)
                                                           cgcgCACCAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGccc                                                                                                    <  3:367039/135‑1 (MQ=255)
                                                            gcgcACCAGAGAGTTTCGCCAGCAGTCGCATTACAGTCTCGCAAAACATCGTTGGCACCACTCCTATAATGCGATCCGGCTTCCTGGGTCGTTTCGCCATTAGCTGAAATAAACTGCTGACGTCAATACTGCCCAGAt                                                                                                <  2:321015/138‑1 (MQ=255)
                                                            gcgcACCAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCCCCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGAt                                                                                                >  1:321015/1‑138 (MQ=255)
                                                            gcgcACCAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAATCTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGt                                                                                     >  5:68077/1‑149 (MQ=255)
                                                                aCCAGAGAGTTTCGCCAGCAGGCGCATTCACGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCATCAGGCGttt                                                                                   >  3:46118/1‑147 (MQ=255)
                                                                  caaaacagccgagcaccctgaaacgcctgttgcatctgggcagttttgccgtcagcagtttctttccgctgatggcgcaaCGTCGTTGCGCCATCAGCGGAAAGAAActgc                                                                                                                     <  1:372718‑M1/31‑1 (MQ=255)
                                                                  caaaacagccgagcaccctgaaacgcctgttgcatctgggcagttttgccgtcagcagtttctttccgctgatggcgcaaCGTCGTTGCGCCATCAGCGGAAAGAAActgc                                                                                                                     >  2:372718‑M1/81‑111 (MQ=255)
                                                                  cAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAgg                                                                               <  4:162102/149‑1 (MQ=255)
                                                                  cAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAgg                                                                               <  1:240957/149‑1 (MQ=255)
                                                                    gagagTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGt                                                                             >  5:66548/1‑149 (MQ=255)
                                                                        gTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTc                                                                         >  8:52987/1‑149 (MQ=255)
                                                                         tttCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCg                                                                        >  4:309743/1‑149 (MQ=255)
                                                                           tCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGACTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCgg                                                                       <  3:181813/148‑1 (MQ=255)
                                                                             gCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGCt                                                                     <  3:272305/148‑1 (MQ=255)
                                                                              ccAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGCTGt                                                                   >  2:36698/1‑149 (MQ=255)
                                                                               cagcagGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAAc                                                                                           <  8:310586/124‑1 (MQ=255)
                                                                                     gcgcATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGcc                                                                                                     >  6:346900/1‑108 (MQ=255)
                                                                                     gcgcATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGcc                                                                                                     <  5:346900/108‑1 (MQ=255)
                                                                                                    gcAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCGGGCAgc                                             >  1:262229/1‑149 (MQ=255)
                                                                                                      aaaaCAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAACACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCGGGCAgcgc                                           >  3:339840/1‑149 (MQ=255)
                                                                                                      aaaaCAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGCTGCCACAGGCGTTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCGGGCAgcgc                                           >  4:253267/1‑149 (MQ=255)
                                                                                                      aaaaCAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGc                                                                      >  8:394127/1‑122 (MQ=255)
                                                                                                      aaaaCAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGc                                                                      <  7:394127/122‑1 (MQ=255)
                                                                                                      aaaaCAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCGGGCAgcgc                                           >  1:204908/1‑149 (MQ=255)
                                                                                                               ttGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCGGGCAGCGCCACACCGTg                                  <  1:41119/149‑1 (MQ=255)
                                                                                                                  gCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCg                                                   >  8:323597/1‑129 (MQ=255)
                                                                                                                  gCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCg                                                   <  7:323597/129‑1 (MQ=255)
                                                                                                                     ccacGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCGGGCAGCGCCACACCGTGGCGGcc                            <  2:262229/149‑1 (MQ=255)
                                                                                                                     ccacGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGGTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCGGGCAGCGCCACGGTGTggcgctg                            <  1:238277/149‑4 (MQ=255)
                                                                                                                      cacGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCGGGCAGCGCCACACCGTGGCGGccc                           >  5:172111/1‑149 (MQ=255)
                                                                                                                         gCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCGGGCAGCGCCACACCGTGGCGGCCCCct                        >  3:259647/1‑149 (MQ=255)
                                                                                                                            tttctttccgctgatggcgcaaCGTCGCTGGAAGC‑‑CGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCGGGCAGCGCCACACCGTGGCGGCCCCCTCTTCTCg                 <  1:88034‑M1/127‑1 (MQ=255)
                                                                                                                            aataatGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGCCGGCAAAACGGCCCAGATGCAACAGGCGGTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCGGGCAGCGCCCCACCGTGGCGGCCCCctctg                     >  1:98755/1‑148 (MQ=255)
                                                                                                                            aataatGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCGGGCAGCGCCACACCGTGGCGGCCCCCtctt                     >  3:37072/1‑149 (MQ=255)
                                                                                                                                   cGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCGGGCAGCGCCACACCGTGGCGGCCCCCTCTTCTCGttt              <  5:353926/149‑1 (MQ=255)
                                                                                                                                     aTCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCGGGCAGCGCCACACCGTGGCGGCCCCCTCTTCTCGTTTg             >  5:70209/1‑148 (MQ=255)
                                                                                                                                      tCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCGGGCAGCGCCACACCGTGGCGGTCCCCTCTTCTCGTTTGTa           <  6:68077/149‑1 (MQ=255)
                                                                                                                                      tCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCGGGCAGCGCCACACCGTGGCGGCCCCCTCTTCTCGTTTg             >  4:324884/1‑147 (MQ=255)
                                                                                                                                            ttCCAGCGACGTTGCGCCATCAGCGGAAAGAAACAGCTGACGGCAAAACGGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCGGGCAGCGCCACACCGTGGCGGCCCCCTCTTCTCGtt               >  3:273263/1‑139 (MQ=255)
                                                                                                                                              ccAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCGGGCAGCGCCACACCGTGGCGGCCCCCTCTTCTCGTTTGTAGCGCCAg    <  3:324884/148‑1 (MQ=255)
                                                                                                                                              ccAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCGGGCAGCGCCACACCGTGGCGGCCCCCTCTTCTCGGTTGTAGCGCCAgg   >  7:176097/1‑149 (MQ=255)
                                                                                                                                               cAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCGGGCAGCGCCACACCGTGGCGGCCCCCTCTTCTCGTTTGTAGCGCCAGGc  >  5:293830/1‑149 (MQ=255)
                                                                                                                                                  |                                                                                                                                                 
CGGCAAGGCCCAGCCCCAGCATGGCGTCCACTTCGTAATCCTGAATATGCAGCACGGTACGCGCACCAGAGAGTTTCGCCAGCAGGCGCATTCCCGGCGCGCAAAACAGCGTTGGCACCACGCCAATAATGCGATCCGGCTTCCAGCGACGTTGCGCCATCAGCGGAAAGAAACTGCTGACGGCAAAACTGCCCAGATGCAACAGGCGTTTCAGGGTGCTCGGCTGTTTTGGCACATACAGCGGGCAGCGCCACACCGTGGCGGCCCCCTCTTCTCGTTTGTAGCGCCAGGC  >  NC_000913/2125293‑2125584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.