New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2768010	28 (0.830)	6 (0.190)	6/248	2.6	16.8%	coding (301/864 nt)	yfjP	CP4‑57 prophage; 50S ribosome‑binding GTPase family protein
	?	NC_000913	= 2768033	33 (1.030)					coding (324/864 nt)	yfjP	CP4‑57 prophage; 50S ribosome‑binding GTPase family protein
Rejected: Frequency below/above cutoff threshold.

TATCGCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATACCGGCATAAGATGCTGTTTGTTATCAGCCA  >  NC_000913/2767891‑2768170                                                                                                                                               |                                                                                                                                          tATCGCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACcgcgaa                                                                                                                                     >  7:41038‑M2/1‑143 (MQ=255) tATCGCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACcgcgaa                                                                                                                                     <  7:11437‑M2/149‑7 (MQ=255) tATCGCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACc                                                                                                                                          <  8:21583‑M2/144‑2 (MQ=255) tATCGCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACc                                                                                                                                          >  7:21583‑M2/1‑143 (MQ=255)            aGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCg                                                                                                                          <  2:168014/149‑1 (MQ=255)                   tAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGAc                                                                                                                   <  8:11437/149‑1 (MQ=255)                                 cGTGATCCTTTACGCGTTCGCCTGCAGATTGGAGAACACTTTATGACCTTCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGGGCGCGATACCGAGTATGCGGCGCGGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCt                                                                                                     <  7:123816/149‑1 (MQ=25)                                          ttACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGc                                                                                            >  3:104363/1‑149 (MQ=255)                                                tttCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCtgatga                                                                                      >  5:126312/1‑149 (MQ=255)                                                    gCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCgg                                                                                  <  4:104363/149‑1 (MQ=255)                                                           gATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTgg                                                                           >  4:61750/1‑149 (MQ=255)                                                                gagaACACTTTATGACGATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGa                                                                                                   <  8:106939/120‑1 (MQ=255)                                                                gagaACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGa                                                                                                   >  7:106939/1‑120 (MQ=255)                                                                   aaCACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACtgat                                                                   <  1:113107/149‑1 (MQ=255)                                                                     cacTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACtgat                                                                   >  3:22456/1‑147 (MQ=255)                                                                                cATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCtgt                                                                                                         <  8:42490/98‑1 (MQ=255)                                                                                cATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCtgt                                                                                                         >  7:42490/1‑98 (MQ=255)                                                                                cATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTAcc                                                      <  6:126312/149‑1 (MQ=255)                                                                                  tCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACtga                                                                    <  6:157600/133‑1 (MQ=255)                                                                                  tCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACtga                                                                    >  5:157600/1‑133 (MQ=255)                                                                                                 gCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGaa                                     <  3:61750/149‑1 (MQ=255)                                                                                                 gCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGaa                                     <  5:2712/149‑1 (MQ=255)                                                                                                       gCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTaa                                                                                               <  2:179772/85‑1 (MQ=255)                                                                                                       gCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTaa                                                                                               >  1:179772/1‑85 (MQ=255)                                                                                                       gCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATAc                               >  2:123050/1‑149 (MQ=255)                                                                                                        cGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTa                                                        >  1:92309/1‑123 (MQ=255)                                                                                                        cGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTa                                                        <  2:92309/123‑1 (MQ=255)                                                                                                        cGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGaa                                     >  5:28400/1‑142 (MQ=255)                                                                                                        cGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGaa                                     <  6:28400/142‑1 (MQ=255)                                                                                                              tGGCGTTCGCGATACCGAGTATGCTGCGCTGTACcgcgaacgccactttcgcccacgccgggcagatccacgatggtcataaagtgttctccaat                                                                              >  7:52085‑M2/1‑34 (MQ=255)                                                                                                              tGGCGTTCGCGATACCGAGTATGCTGCGCTGTACcgcgaacgccactttcgcccacgccgggcagatccacgatggtcataaagtgttctccaat                                                                              <  8:52085‑M2/95‑62 (MQ=255)                                                                                                               ggCGTTCGCGATACCGAGTATGCTGCGCTGTACcgcgaacgccactttcgcccacgccgggcagatccacgatggtcataaagtgttctccaatctgc                                                                          >  6:11510‑M2/1‑33 (MQ=255)                                                                                                               ggCGTTCGCGATACCGAGTATGCTGCGCTGTACcgcgaacgccactttcgcccacgccgggcagatccacgatggtcataaagtgttctccaatctgc                                                                          <  5:11510‑M2/98‑66 (MQ=255)                                                                                                                  gTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATACCGGCATAAGAt                    >  4:36200/1‑149 (MQ=255)                                                                                                                   ttCGCGATACCGAGTATGCTGCGCTGTACcgcgaacgccactttcgcccacgccgggcagatccacgatggtcataaagtgttctccaatctgcaggcgaaagcgtaaa                                                           <  2:105822‑M2/109‑81 (MQ=255)                                                                                                                   ttCGCGATACCGAGTATGCTGCGCTGTACcgcgaacgccactttcgcccacgccgggcagatccacgatggtcataaagtgttctccaatctgcaggcgaaagcgtaaa                                                           >  1:105822‑M2/1‑29 (MQ=255)                                                                                                                            ccGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATACCGGCATAAGATGCtgtttgtt          <  4:22456/149‑1 (MQ=255)                                                                                                                             cGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATACCGGCATAAGATGCTGTTTGTTa         <  6:82166/149‑1 (MQ=255)                                                                                                                             cGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATACCGGCATAAGATGCTGTTTGTTa         >  5:82166/1‑149 (MQ=255)                                                                                                                             cGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATACCGGCATAAGATGCTGTTTGTTa         >  1:76264/1‑149 (MQ=255)                                                                                                                                gTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATACCGGCATAAGATGCTGTTTGTTAt        >  4:15191/1‑147 (MQ=255)                                                                                                                                     ctgcGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATACCGGCATAAGATGCTGTTTGTTATCAGCCa  <  3:15191/148‑1 (MQ=255)                                                                                                                                     ctgcGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATACCGGCATAAGATGCTGTTTGTTATCAGCCa  <  3:36200/148‑1 (MQ=255)                                                                                                                                               |                                                                                                                                          TATCGCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATACCGGCATAAGATGCTGTTTGTTATCAGCCA  >  NC_000913/2767891‑2768170

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.