mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 60.6% | 0.9 / 33.5 | 33 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 2,391,417 | 0 | C | G | 25.0% | 37.4 / 10.6 | 20 | W30S (TGG→TCG) | nuoN | NADH:ubiquinone oxidoreductase, membrane subunit N |
| * | NC_000913 | 699,556 | 0 | C | T | 24.1% | 49.5 / 13.1 | 29 | intergenic (‑379/+18) | asnB/umpH | asparagine synthetase B/UMP phosphatase |
| * | NC_000913 | 699,559 | 0 | A | G | 24.1% | 47.9 / 14.0 | 29 | intergenic (‑382/+15) | asnB/umpH | asparagine synthetase B/UMP phosphatase |
| * | NC_000913 | 1,159,335 | 0 | G | T | 21.2% | 77.0 / 14.0 | 33 | intergenic (+33/+27) | ptsG/fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| * | NC_000913 | 1,159,336 | 0 | A | C | 21.2% | 59.7 / 19.1 | 33 | intergenic (+34/+26) | ptsG/fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| * | NC_000913 | 1,987,857 | 0 | C | T | 20.7% | 55.2 / 10.7 | 29 | intergenic (‑99/+16) | yecJ/azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| * | NC_000913 | 1,987,858 | 0 | G | C | 20.0% | 67.1 / 14.1 | 30 | intergenic (‑100/+15) | yecJ/azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| * | NC_000913 | 1,987,859 | 0 | G | C | 20.0% | 70.2 / 13.9 | 30 | intergenic (‑101/+14) | yecJ/azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| Marginal new junction evidence (lowest skew 10 of 35 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4466003 = | 33 (1.010) | 5 (0.160) | 5/230 | 3.2 | 14.5% | coding (178/1422 nt) | treB | trehalose‑specific PTS enzyme: IIB and IIC component |
| ? | NC_000913 | 4466024 = | 28 (0.920) | coding (157/1422 nt) | treB | trehalose‑specific PTS enzyme: IIB and IIC component | |||||
| * | ? | NC_000913 | 2066558 = | NA (NA) | 6 (0.200) | 5/232 | 3.2 | 38.9% | noncoding (796/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 2066607 = | 10 (0.310) | noncoding (747/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 2172093 = | 37 (1.140) | 5 (0.160) | 5/234 | 3.3 | 13.5% | coding (781/1041 nt) | gatD | galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding |
| ? | NC_000913 | 2172116 = | 29 (0.940) | coding (758/1041 nt) | gatD | galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding | |||||
| * | ? | NC_000913 | 4503437 = | 49 (1.510) | 4 (0.140) | 4/224 | 3.5 | 8.4% | noncoding (79/1426 nt) | IS4 | repeat region |
| ? | NC_000913 | 4503467 = | 43 (1.450) | noncoding (49/1426 nt) | IS4 | repeat region | |||||
| * | ? | NC_000913 | = 3429885 | 29 (0.890) | 4 (0.140) | 4/224 | 3.5 | 11.4% | coding (139/258 nt) | yrdB | DUF1488 family protein |
| ? | NC_000913 | = 3429896 | 36 (1.220) | coding (128/258 nt) | yrdB | DUF1488 family protein | |||||
| * | ? | NC_000913 | = 3373973 | 32 (0.980) | 6 (0.200) | 4/224 | 3.5 | 19.3% | coding (517/792 nt) | nanR | sialic acid‑inducible nan operon repressor |
| ? | NC_000913 | = 3374015 | 21 (0.710) | coding (475/792 nt) | nanR | sialic acid‑inducible nan operon repressor | |||||
| * | ? | NC_000913 | 2799624 = | 21 (0.650) | 4 (0.130) | 4/226 | 3.5 | 18.9% | intergenic (+11/+26) | alaE/ygaC | alanine exporter, alanine‑inducible, stress‑responsive/uncharacterized protein |
| ? | NC_000913 | 2799647 = | 15 (0.500) | intergenic (+34/+3) | alaE/ygaC | alanine exporter, alanine‑inducible, stress‑responsive/uncharacterized protein | |||||
| * | ? | NC_000913 | = 618066 | 35 (1.080) | 6 (0.210) | 4/220 | 3.5 | 15.7% | intergenic (+28/‑188) | entF/fepE | enterobactin synthase multienzyme complex component, ATP‑dependent/regulator of length of O‑antigen component of lipopolysaccharide chains |
| ? | NC_000913 | = 618073 | 33 (1.130) | intergenic (+35/‑181) | entF/fepE | enterobactin synthase multienzyme complex component, ATP‑dependent/regulator of length of O‑antigen component of lipopolysaccharide chains | |||||
| * | ? | NC_000913 | = 4131735 | 37 (1.140) | 4 (0.130) | 4/228 | 3.6 | 10.0% | coding (1901/2433 nt) | metL | Bifunctional aspartokinase/homoserine dehydrogenase 2 |
| ? | NC_000913 | = 4131763 | 38 (1.260) | coding (1929/2433 nt) | metL | Bifunctional aspartokinase/homoserine dehydrogenase 2 | |||||
| * | ? | NC_000913 | = 3767466 | 21 (0.650) | 4 (0.130) | 4/234 | 3.6 | 15.4% | pseudogene (246/945 nt) | rhsJ | Rhs‑family protein |
| ? | NC_000913 | = 3767490 | 24 (0.780) | pseudogene (270/945 nt) | rhsJ | Rhs‑family protein | |||||