| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2827680 = | 44 (0.810) | 3 (0.060) | 3/254 | NT | 6.8% | coding (319/372 nt) | srlB | glucitol/sorbitol‑specific enzyme IIA component of PTS |
| ? | NC_000913 | 2827700 = | 39 (0.740) | coding (339/372 nt) | srlB | glucitol/sorbitol‑specific enzyme IIA component of PTS | |||||
CAACCGCGACGCGATACCCCTCGGCAGCCAGACCGTGGCACAGGAACGCGCCTAAGGTTTGCCCACCACCGATGACAACGGCAACCTGATTCATTTTTTACTCCTTAACAGATTCAAACTTCAAAACCGATCCCGGCGCGATATCGTCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2827830‑2827680‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggATCGGTTTTGAAGTTTGAATCTGTTAAGGAGTAAAAAATGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTATCGCGTCGC > NC_000913/2827700‑2827825 CAACCGCGACGCGATACCCCTCGGCAGCCAGCCCGTGGCACAGGAACGCGCCTAAGGTTTGCCCACCACCGATGACAACGGCAACCTGATTCATTTTTTACTCCTTAACAGATTCAAACTTCAAAACCGATCCCGGCGCGATATCGTCG > 5:52975/1‑149 AACCGCGACGCGATACCCCTCGGCAGCCAGACCGTGGCACAGGAACGCGCCTAAGGTTTGCCCACCACCGATGACAACGGCAACCTGATTCATTTTTTACTCCTTAACAGATTCAAACTTCAAAACCGATCCCGGCGCGATATCGTCGG < 6:133041/149‑1 ACCGCGACGCGATACCCCTCGGCAGCCAGACCGTGGCACAGGAACGCGCCTAAGGTTTGCCCACCACCGATGACAACGGCAACCTGATTCATTTTTTACTCCTTAACAGATTCAAACTTCAAAACCGATCCCGGCGCGATATCGTCGGG < 5:215259/149‑1 CACAGGAACGCGCCTAAGGTTTGCCCACCACCGATGACAACGGCAACCTGATTCATTTTTTACTCCTTAACAGATTCAAACTTCAAAACCGATCCCGACGATATCGCGCCGGGATCGGTTTTGAAGT > 7:148242/1‑127 CACAGGAACGCGCCTAAGGTTTGCCCACCACCGATGACAACGGCAACCTGATTCATTTTTTACTCCTTAACAGATTCAAACTTCAAAACCGATCCCGACGATATCGCGCCGGGATCGGTTTTGAAGT < 8:148242/127‑1 GATCCCGGCGCGATATCGTCGGGATCGGTTTTGAAGTTTGAATCTGTTAAGGAGTAAAAAATGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTATCGCGTCGC > 7:48998/1‑149 CAACCGCGACGCGATACCCCTCGGCAGCCAGACCGTGGCACAGGAACGCGCCTAAGGTTTGCCCACCACCGATGACAACGGCAACCTGATTCATTTTTTACTCCTTAACAGATTCAAACTTCAAAACCGATCCCGGCGCGATATCGTCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2827830‑2827680‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggATCGGTTTTGAAGTTTGAATCTGTTAAGGAGTAAAAAATGAATCAGGTTGCCGTTGTCATCGGTGGTGGGCAAACCTTAGGCGCGTTCCTGTGCCACGGTCTGGCTGCCGAGGGGTATCGCGTCGC > NC_000913/2827700‑2827825 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |