New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1201875	94 (1.040)	3 (0.030)	3/250	NT	3.3%	coding (210/309 nt)	ymfJ	e14 prophage; uncharacterized protein
	?	NC_000913	= 1201898	85 (0.980)					coding (187/309 nt)	ymfJ	e14 prophage; uncharacterized protein
Rejected: Frequency below/above cutoff threshold.

AATATATTTGTCTGTAAATTTGAACAAAGCGCATGCTTACTTCCGTCTGCTTCCTTAGTTGGTAACGATTTCGTTCATTACGATCTTACGCCTAAGCCCATCAAGCTCGATTCTTAAAGCCTTAACCATTGTGTCGTGATAAACACGGCTCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1201722‑1201875 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcaccCCTCTGCCATGCAATGGAGAGAAGGTGAGCCGTGTTTATCACGACACAATGGTTAAGGCTTTAAGAATCGAGCTTGATGGGCTTAGGCGTAAGATCGTAATGAACGAAATCGTTACCAACTAAGGAAGCAGACGGAAGTAAGCATGCG  <  NC_000913/1201898‑1201751                                                                                                                                                                                                                                                                                                                AATATATTTGTCTGTAAATTTGAACAAAGCGCATGCTTACTTCCGTCTGCTTCCTTAGTTGGTAACGATTTCGTTCATTACGATCTTACGCCTAAGCCCATCAAGCTCGATTCTTAAAGCCTTAACCATTGTGTCGTGATAAACACGGC                                                                                                                                                           <  1:302418/149‑1  ATATATTTGTCTGTAAATTTGAACAAAGCGCATGCTTACTTCCGTCTGCTTCCTTAGTTGGTAACGATTTCGTTCATTACGATCTTACGCCTAAGCCCATCAAGCTCGATTCTTAAAGCCTTACCCATTGTGTCGTGATAAACACGGCT                                                                                                                                                          >  8:356415/1‑149  ATATATTTGTCTGTAAATTTGAACAAAGCGCATGCTTACTTCCGTCTGCTTCCTTAGTTGGTAACGATTTCGTTCATTACGATCTTACGCCTAAGCCCATCAAGCTCGATTCTTAAAGCCTTAACCATTGTGTCGTGATAAACACGGCT                                                                                                                                                          >  2:4400/1‑149       TTTGTCTGTAAATTTGAACAAAGCGCATGCTTACTTCCGTCTGCTTCCTTAGTTGGTAACGATTTCGTTCATTACGATCTTACGCCTAAGCCCATCAAGCTCGATTCTTAAAGCCTTAACCATTGTGTCGTGATAAACACGGCTCAC                                                                                                                                                       >  5:386668/1‑147       TTTGTCTGTAAATTTGAACAAAGCGCATGCTTACTTCCGTCTGCTTCCTTAGTTGGTAACGATTTCGTTCATTACGATCTTACGCCTAAGCCCATCAAGCTCGATTCTTAAAGCCTTAACCATTGTGTCGTGATAAACACGGCTCAC                                                                                                                                                       <  6:386668/147‑1                                        CTTCCGTCTGCTTCCTTAGTTGGTAACGATTTCGTTCATTACGATCTTACGCCTAAGCCCATCAAGCTCGATTCTTAAAGCCTTAACCATTGTGGCGTGATAAACACGGCTCACCCCTCTGCCATGCAATGGAGAGAAGGTGAGCCGTG                                                                                                                    <  7:56829/149‑1                                                    TCCTTAGTTGGTAACGATTTCGTTCATTACGATCTTACGCCTAAGCCCATCAAGCTCGATTCTTAAAGCCTTAACCATTGTGTCGTGATAAACACGGCTCACCCCTCTGCCATGCAATGGAGAGAAGGTGAGCC                                                                                                                       <  3:7718/134‑1                                                    TCCTTAGTTGGTAACGATTTCGTTCATTACGATCTTACGCCTAAGCCCATCAAGCTCGATTCTTAAAGCCTTAACCATTGTGTCGTGATAAACACGGCTCACCCCTCTGCCATGCAATGGAGAGAAGGTGAGCC                                                                                                                       >  4:7718/1‑134                                                                                                                                                     CTCACACCTCTGCATTGCTATTGAGAGTAGTTGAGCCTTTTTTATCACGACACAATGTTTAAGGCTTTAATAATCTAGCTTGATGGGCTTAGGCGTAAGATCGTAATGAACGAAATCGTTACCATCTAAGGAAGCAGAAGGAAGTAAGC       <  5:225914/149‑1                                                                                                                                                      TCACCCCTCTGCCATGCAATGGAGAGAAGGTGAGCCGTGTTTATCACGACACAATGGTTAAGGCTTTAAGAATCGAGCTTGATGGGCTTAGGCGTAAGATCGTAATGAACGAAATCGTTACCAACTAAGGAAGCAGACGGAAGTAAGCA      >  2:138479/1‑149                                                                                                                                                      TCACCCCTCTGCCATGCAATGGAGAGAAGGTGAGCCGTGTTTATCACGACACAATGGTTAAGGCTTTAAGAATCGAGCTTGATGGGCTTAGGCGTAAGATCGTAATGAACGAAATCGTTACCAACTAAGGAAGCAGACGGAAGTAAGCA      >  2:363650/1‑149                                                                                                                                                        ACCCCTCTGCCATGCAATGGAGAGAAGGTGAGCCGTGTTTATCACGACACAATGGTTAAGGCTTTAAGAATCGAGCTTGATGGGCTTAGGCGTAAGATCGTAATGAACGAAATCGTTACCAACTAAGGAAGCAGACGGAAGTAAGCATG    >  1:29620/1‑149                                                                                                                                                        ACCCCTCTGCCATGCAATGGAGAGAAGGTGAGCCGTGTTTATCACGACACAATGGTTAAGGCTTTAAGAATCGAGCTTGATGGGCTTAGGCGTAAGATCGTAATGAACGAAATCGTTACCAACTAAGGAAGCAGACGGAAGTAAGCATG    >  3:205553/1‑149                                                                                                                                                        ACCCCTCTGCCATGCAATGGAGAGAAGGTGAGCCGTGTTTATCACGACACAATGGTTAAGGCTTTAAGAATCGAGCTTGATGGGCTTAGGCGTAAGATCGTAATGAACGAAATCGTTACCAACTAAGGAAGCAGACGGAAGTAAGCATG    >  5:224504/1‑149                                                                                                                                                          CCCTCTGCCATGCAATGGAGAGAAGGTGAGCCGTGGTTATCACGACACAATGGTGAAGGCTTTAAGAATCGAGCTTGATGGGCGTAGGCGTAAGATCGTAATGTACGAAATCGTTACCAACTAAGGCCGCAGACGGAGGTAAGCCTGCG  >  4:274068/1‑149                                                                                                                                                                                                                                                                                                                AATATATTTGTCTGTAAATTTGAACAAAGCGCATGCTTACTTCCGTCTGCTTCCTTAGTTGGTAACGATTTCGTTCATTACGATCTTACGCCTAAGCCCATCAAGCTCGATTCTTAAAGCCTTAACCATTGTGTCGTGATAAACACGGCTCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1201722‑1201875 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcaccCCTCTGCCATGCAATGGAGAGAAGGTGAGCCGTGTTTATCACGACACAATGGTTAAGGCTTTAAGAATCGAGCTTGATGGGCTTAGGCGTAAGATCGTAATGAACGAAATCGTTACCAACTAAGGAAGCAGACGGAAGTAAGCATGCG  <  NC_000913/1201898‑1201751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.