mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 18 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4621634 = | 112 (1.290) | 5 (0.060) | 5/238 | NT | 4.6% | intergenic (+32/‑135) | deoD/yjjJ | purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase |
| ? | NC_000913 | 4621662 = | 106 (1.320) | intergenic (+60/‑107) | deoD/yjjJ | purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase | |||||
| * | ? | NC_000913 | = 4004137 | 137 (1.570) | 4 (0.050) | 4/246 | NT | 2.9% | coding (42/891 nt) | rarD | putative chloramphenical resistance permease |
| ? | NC_000913 | = 4004155 | 141 (1.700) | coding (24/891 nt) | rarD | putative chloramphenical resistance permease | |||||
| * | ? | NC_000913 | = 3967703 | 116 (1.330) | 4 (0.050) | 4/234 | NT | 3.5% | intergenic (+27/‑213) | rho/wecA | transcription termination factor/UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase |
| ? | NC_000913 | = 3967707 | 115 (1.460) | intergenic (+31/‑209) | rho/wecA | transcription termination factor/UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase | |||||
| * | ? | NC_000913 | = 3775718 | 82 (0.940) | 4 (0.050) | 4/246 | NT | 4.4% | coding (147/588 nt) | mtlR | mannitol operon repressor |
| ? | NC_000913 | = 3775735 | 95 (1.140) | coding (164/588 nt) | mtlR | mannitol operon repressor | |||||
| * | ? | NC_000913 | 3775583 = | 88 (1.010) | 3 (0.040) | 3/242 | NT | 3.5% | coding (12/588 nt) | mtlR | mannitol operon repressor |
| ? | NC_000913 | 3775603 = | 84 (1.030) | coding (32/588 nt) | mtlR | mannitol operon repressor | |||||
| * | ? | NC_000913 | = 3408870 | 81 (0.930) | 4 (0.050) | 3/242 | NT | 4.9% | coding (1264/1452 nt) | panF | pantothenate:sodium symporter |
| ? | NC_000913 | = 3408895 | 81 (0.990) | coding (1289/1452 nt) | panF | pantothenate:sodium symporter | |||||
| * | ? | NC_000913 | = 3099299 | 84 (0.960) | 4 (0.050) | 4/250 | NT | 4.6% | coding (267/1008 nt) | yggM | DUF1202 family putative secreted protein |
| ? | NC_000913 | = 3099327 | 86 (1.020) | coding (239/1008 nt) | yggM | DUF1202 family putative secreted protein | |||||
| * | ? | NC_000913 | 2768888 = | 86 (0.990) | 3 (0.040) | 3/250 | NT | 3.9% | coding (224/822 nt) | yfjQ | CP4‑57 prophage; uncharacterized protein |
| ? | NC_000913 | 2768933 = | 65 (0.770) | coding (269/822 nt) | yfjQ | CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | = 2193107 | 102 (1.170) | 4 (0.050) | 4/248 | NT | 3.8% | coding (1062/1110 nt) | mrp | antiporter inner membrane protein |
| ? | NC_000913 | = 2193136 | 105 (1.250) | coding (1033/1110 nt) | mrp | antiporter inner membrane protein | |||||
| * | ? | NC_000913 | 2161648 = | 102 (1.170) | 5 (0.060) | 5/254 | NT | 4.9% | coding (185/1416 nt) | iceT | putative citrate/iron‑citrate/zinc‑citrate efflux transporter |
| ? | NC_000913 | 2161675 = | 92 (1.070) | coding (212/1416 nt) | iceT | putative citrate/iron‑citrate/zinc‑citrate efflux transporter | |||||