mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 169,015 | G→A | 68.4% | W511* (TGG→TAG) | fhuA → | ferrichrome outer membrane transporter |
| RA | 169,034 | C→A | 17.7% | Y517* (TAC→TAA) | fhuA → | ferrichrome outer membrane transporter |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 268,865 | T→A | 5.3% | L32F (TTA→TTT) | ykfA ← | CP4‑6 prophage; putative GTP‑binding protein |
| RA | 282,428 | G→A | 5.3% | G51S (GGC→AGC) | yagE → | 2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage |
| RA | 356,794 | C→T | 5.7% | Y208Y (TAC→TAT) | codA → | cytosine/isoguanine deaminase |
| RA | 656,862 | G→A | 5.2% | S102S (TCG→TCA) | pagP → | phospholipid:lipid A palmitoyltransferase |
| RA | 662,683 | A→T | 5.5% | intergenic (‑41/+69) | ybeD ← / ← dacA | UPF0250 family protein/D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 5) |
| RA | 662,684 | G→T | 5.8% | intergenic (‑42/+68) | ybeD ← / ← dacA | UPF0250 family protein/D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 5) |
| RA | 662,685 | A→C | 5.3% | intergenic (‑43/+67) | ybeD ← / ← dacA | UPF0250 family protein/D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 5) |
| RA | 662,686 | A→T | 5.3% | intergenic (‑44/+66) | ybeD ← / ← dacA | UPF0250 family protein/D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 5) |
| RA | 764,445 | G→A | 5.1% | G89D (GGC→GAC) | sucD → | succinyl‑CoA synthetase, NAD(P)‑binding, alpha subunit |
| RA | 777,363 | C→T | 6.2% | A341V (GCC→GTC) | tolA → | membrane anchored protein in TolA‑TolQ‑TolR complex |
| RA | 875,393 | C→A | 8.6% | S20* (TCA→TAA) | yliF → | putative membrane‑anchored diguanylate cyclase |
| RA | 987,560 | G→C | 5.1% | intergenic (‑578/+25) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 1,063,034 | C→A | 5.7% | G248W (GGG→TGG) | cbpA ← | DnaK co‑chaperone; curved DNA‑binding protein |
| RA | 1,063,038 | C→A | 6.0% | Q246H (CAG→CAT) ‡ | cbpA ← | DnaK co‑chaperone; curved DNA‑binding protein |
| RA | 1,063,039 | T→G | 6.1% | Q246P (CAG→CCG) ‡ | cbpA ← | DnaK co‑chaperone; curved DNA‑binding protein |
| RA | 1,063,040 | G→C | 5.6% | Q246E (CAG→GAG) ‡ | cbpA ← | DnaK co‑chaperone; curved DNA‑binding protein |
| RA | 1,063,041 | G→C | 6.0% | S245R (AGC→AGG) ‡ | cbpA ← | DnaK co‑chaperone; curved DNA‑binding protein |
| RA | 1,063,042 | C→A | 5.5% | S245I (AGC→ATC) ‡ | cbpA ← | DnaK co‑chaperone; curved DNA‑binding protein |
| RA | 1,063,043 | T→G | 6.9% | S245R (AGC→CGC) ‡ | cbpA ← | DnaK co‑chaperone; curved DNA‑binding protein |
| RA | 1,063,047 | T→G | 5.9% | P243P (CCA→CCC) | cbpA ← | DnaK co‑chaperone; curved DNA‑binding protein |
| RA | 1,082,418 | A→T | 5.2% | N59I (AAC→ATC) | efeO → | inactive ferrous ion transporter EfeUOB |
| RA | 1,128,454 | Δ1 bp | 5.2% | coding (616/1536 nt) | murJ → | putative lipid II flippase |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,316,235 | G→T | 5.1% | intergenic (‑200/+181) | yciG ← / ← trpA | KGG family protein/tryptophan synthase, alpha subunit |
| RA | 1,371,933 | T→A | 5.2% | L9I (TTA→ATA) | ycjN → | putative ABC sugar transporter periplasmic binding protein |
| RA | 1,410,986 | A→G | 5.7% | intergenic (+102/+27) | dbpA → / ← ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| RA | 1,458,783 | C→T | 5.4% | Q174* (CAG→TAG) | paaG → | 1,2‑epoxyphenylacetyl‑CoA isomerase, oxepin‑CoA‑forming |
| RA | 1,490,226 | T→C | 6.9% | pseudogene (488/750 nt) | gapC ← | pseudogene, GAP dehydrogenase; glyceraldehyde‑3‑phosphate dehydrogenase (second fragment) |
| RA | 1,510,710 | G→A | 5.9% | Q236Q (CAG→CAA) | ydcR → | putative DNA‑binding transcriptional regulator and putative aminotransferase |
| RA | 1,614,396 | T→C | 6.9% | H103R (CAT→CGT) | sad ← | succinate semialdehyde dehydrogenase, NAD(P)+‑dependent |
| RA | 1,615,422 | G→A | 6.4% | A207T (GCC→ACC) | yneJ → | putative DNA‑binding transcriptional regulator |
| RA | 1,647,434 | A→T | 5.1% | pseudogene (203/279 nt) | ydfX ← | pseudogene, Qin prophage;Phage or Prophage Related |
| RA | 1,660,200 | C→G | 5.6% | A711G (GCC→GGC) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,662,350 | C→T | 100% | P599S (CCC→TCC) | ynfF → | S‑ and N‑oxide reductase, A subunit, periplasmic |
| RA | 1,671,938 | T→C | 5.1% | intergenic (+78/‑22) | ydgU → / → ydgD | stationary phase‑induced protein/putative peptidase |
| RA | 1,689,817 | C→A | 5.2% | intergenic (+66/‑35) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,689,819 | A→T | 6.1% | intergenic (+68/‑33) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,689,821 | T→G | 5.5% | intergenic (+70/‑31) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,708,662 | C→G | 12.0% | Q582E (CAA→GAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,958 | T→C | 20.4% | V680V (GTT→GTC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,744,575 | T→C | 5.3% | I373I (ATT→ATC) | mdtK → | multidrug efflux system transporter |
| RA | 1,764,687 | T→C | 5.7% | intergenic (‑301/+26) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,769,727 | Δ1 bp | 5.5% | coding (654/1113 nt) | ydiK → | UPF0118 family inner membrane protein |
| RA | 1,799,167 | A→C | 5.2% | intergenic (‑225/+59) | pheS ← / ← pheM | phenylalanine tRNA synthetase, alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide |
| RA | 1,805,405 | T→C | 5.3% | T227A (ACA→GCA) | ydiY ← | acid‑inducible putative outer membrane protein |
| RA | 1,806,335 | G→T | 100% | intergenic (‑252/‑35) | ydiY ← / → pfkB | acid‑inducible putative outer membrane protein/6‑phosphofructokinase II |
| RA | 1,840,330 | A→G | 6.3% | A288A (GCA→GCG) | ynjE → | molybdopterin synthase sulfurtransferase |
| RA | 1,965,190 | T→C | 7.4% | Q334Q (CAA→CAG) | flhB ← | flagellin export apparatus, substrate specificity protein |
| RA | 1,965,904 | A→G | 5.4% | I96I (ATT→ATC) | flhB ← | flagellin export apparatus, substrate specificity protein |
| RA | 1,965,907 | C→T | 5.2% | L95L (CTG→CTA) | flhB ← | flagellin export apparatus, substrate specificity protein |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,980,240 | C→A | 5.5% | S458I (AGC→ATC) ‡ | otsA ← | trehalose‑6‑phosphate synthase |
| RA | 1,980,241 | T→A | 5.6% | S458C (AGC→TGC) ‡ | otsA ← | trehalose‑6‑phosphate synthase |
| RA | 1,980,242 | T→G | 6.3% | R457R (CGA→CGC) | otsA ← | trehalose‑6‑phosphate synthase |
| RA | 1,983,452 | A→T | 5.9% | V30E (GTG→GAG) | araH ← | L‑arabinose ABC transporter permease |
| RA | 2,059,939 | G→T | 6.3% | intergenic (+13/+25) | asnU → / ← cbl | tRNA‑Asn/ssuEADCB/tauABCD operon transcriptional activator |
| RA | 2,059,946 | T→A | 5.3% | intergenic (+20/+18) | asnU → / ← cbl | tRNA‑Asn/ssuEADCB/tauABCD operon transcriptional activator |
| RA | 2,059,948 | T→A | 5.3% | intergenic (+22/+16) | asnU → / ← cbl | tRNA‑Asn/ssuEADCB/tauABCD operon transcriptional activator |
| RA | 2,091,487 | A→G | 5.7% | I131V (ATT→GTT) | hisD → | bifunctional histidinal dehydrogenase/ histidinol dehydrogenase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,181,691 | T→C | 5.5% | V199A (GTG→GCG) | yegV → | putative kinase |
| RA | 2,229,278 | G→A | 7.7% | intergenic (+213/+160) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| RA | 2,274,192 | T→C | 7.0% | L5P (CTG→CCG) | yejB → | microcin C ABC transporter permease |
| RA | 2,304,988 | T→C | 5.7% | intergenic (+595/+120) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,085 | A→G | 7.9% | intergenic (+692/+23) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,086 | C→G | 7.9% | intergenic (+693/+22) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,087 | C→T | 7.9% | intergenic (+694/+21) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,318,922 | C→T | 5.2% | A319T (GCA→ACA) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,519,222 | T→G | 6.1% | intergenic (+17/+35) | yfeD → / ← gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| RA | 2,519,225 | T→A | 6.1% | intergenic (+20/+32) | yfeD → / ← gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| RA | 2,519,228 | C→A | 6.5% | intergenic (+23/+29) | yfeD → / ← gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| RA | 2,525,312 | T→A | 5.0% | G62G (GGT→GGA) | yfeN → | putative outer membrane protein |
| RA | 2,560,996 | G→T | 27.0% | intergenic (+98/‑372) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,616,840 | G→A | 5.1% | P249P (CCG→CCA) | bepA → | OM protein maintenance and assembly metalloprotease and chaperone, periplasmic |
| RA | 2,653,367 | G→A | 6.1% | intergenic (+28/‑488) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,372 | T→C | 6.6% | intergenic (+33/‑483) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,660,199 | T→C | 5.4% | M31V (ATG→GTG) | iscU ← | iron‑sulfur cluster assembly scaffold protein |
| RA | 2,677,405 | A→T | 6.1% | I319I (ATT→ATA) | yphE ← | putative sugar ABC transporter ATPase |
| RA | 2,691,169 | A→T | 5.9% | noncoding (172/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,171 | T→A | 6.0% | noncoding (170/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,173 | A→T | 6.0% | noncoding (168/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,699,290 | T→C | 5.1% | S178P (TCC→CCC) | yfhH → | putative DNA‑binding transcriptional regulator |
| RA | 2,789,148 | A→T | 5.5% | Q55L (CAG→CTG) | csiD → | carbon starvation protein |
| RA | 2,866,487 | G→C | 5.0% | intergenic (+22/+72) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,866,488 | G→C | 5.7% | intergenic (+23/+71) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,877,871 | A→T | 6.7% | intergenic (+253/+698) | iap → / ← ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| RA | 3,034,756 | C→T | 5.2% | C140Y (TGC→TAC) | lysS ← | lysine tRNA synthetase, constitutive |
| RA | 3,074,559 | G→A | 6.4% | T44M (ACG→ATG) | yggC ← | putative PanK family P‑loop kinase |
| RA | 3,154,920 | G→A | 5.4% | P100L (CCG→CTG) | yqhC ← | transcriptional activator of yqhD |
| RA | 3,161,358 | G→C | 5.1% | Q438E (CAG→GAG) | ftsP ← | septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) |
| RA | 3,243,989 | T→C | 5.0% | E251E (GAA→GAG) | uxaC ← | uronate isomerase |
| RA | 3,269,956 | T→C | 7.4% | intergenic (+354/+260) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| JC | 3,406,399 | Δ3 bp | 6.3% | coding (483‑485/1350 nt) | accC → | acetyl‑CoA carboxylase, biotin carboxylase subunit |
| RA | 3,514,021 | C→T | 5.3% | L123L (TTG→TTA) | gph ← | phosphoglycolate phosphatase |
| RA | 3,523,857 | G→T | 5.6% | S329S (TCG→TCT) | mrcA → | penicillin‑binding protein 1a, murein transglycosylase and transpeptidase |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,601,507 | G→T | 5.1% | R194S (CGT→AGT) | ftsX ← | putative ABC transporter permease |
| RA | 3,613,431 | A→G | 5.8% | S155G (AGC→GGC) | acpT → | 4'‑phosphopantetheinyl transferase |
| RA | 3,692,807 | T→A | 5.6% | E810D (GAA→GAT) | bcsA ← | cellulose synthase, catalytic subunit |
| RA | 3,728,215 | T→A | 5.9% | K386I (AAA→ATA) | xylB ← | xylulokinase |
| RA | 3,760,782 | C→T | 5.4% | A156A (GCG→GCA) | selA ← | selenocysteine synthase |
| RA | 3,815,801 | Δ1 bp | 100% | intergenic (‑33/+33) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| RA | 4,137,909 | A→C | 5.5% | intergenic (‑252/+23) | yijF ← / ← gldA | DUF1287 family protein/glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase |
| RA | 4,137,910 | C→T | 5.5% | intergenic (‑253/+22) | yijF ← / ← gldA | DUF1287 family protein/glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase |
| RA | 4,137,911 | A→T | 5.4% | intergenic (‑254/+21) | yijF ← / ← gldA | DUF1287 family protein/glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase |
| RA | 4,137,912 | A→G | 5.5% | intergenic (‑255/+20) | yijF ← / ← gldA | DUF1287 family protein/glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase |
| RA | 4,183,106 | C→T | 100% | S621F (TCC→TTC) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,296,060 | C→T | 38.1% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,392,506 | C→G | 10.6% | noncoding (35/76 nt) | glyX → | tRNA‑Gly |
| RA | 4,421,967 | A→G | 5.1% | K87R (AAG→AGG) | ulaC → | L‑ascorbate‑specific enzyme IIA component of PTS |
| RA | 4,451,714 | C→T | 5.4% | R219R (CGC→CGT) | ytfR → | putative sugar ABC transporter ATPase |
| RA | 4,456,659 | G→A | 5.2% | R292H (CGC→CAC) | mpl → | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
| RA | 4,521,083 | A→G | 5.2% | L313P (CTG→CCG) | yjhF ← | putative transporter |
| RA | 4,521,385 | G→T | 5.4% | A212A (GCC→GCA) | yjhF ← | putative transporter |
| RA | 4,597,121 | C→T | 5.7% | intergenic (+109/+29) | lgoD → / ← opgB | L‑galactonate oxidoreductase; L‑gulonate oxidoreductase/OPG periplasmic biosynthetic phosphoglycerol transferases I (membrane‑bound) and II (soluble) |
| RA | 4,597,122 | C→A | 5.7% | intergenic (+110/+28) | lgoD → / ← opgB | L‑galactonate oxidoreductase; L‑gulonate oxidoreductase/OPG periplasmic biosynthetic phosphoglycerol transferases I (membrane‑bound) and II (soluble) |
| RA | 4,597,123 | C→G | 5.5% | intergenic (+111/+27) | lgoD → / ← opgB | L‑galactonate oxidoreductase; L‑gulonate oxidoreductase/OPG periplasmic biosynthetic phosphoglycerol transferases I (membrane‑bound) and II (soluble) |
| RA | 4,597,125 | A→G | 5.3% | intergenic (+113/+25) | lgoD → / ← opgB | L‑galactonate oxidoreductase; L‑gulonate oxidoreductase/OPG periplasmic biosynthetic phosphoglycerol transferases I (membrane‑bound) and II (soluble) |
| RA | 4,606,239 | A→G | 14.0% | noncoding (48/87 nt) | leuP ← | tRNA‑Leu |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423772–3424234 | 3424561–3424238 | 5–790 | 34 [33] | [33] 35 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| * | * | ÷ | NC_000913 | 4107545 | 4108516 | 972 | 34 [31] | [33] 35 | pfkA | pfkA |
| * | * | ÷ | NC_000913 | 4144017 | 4147128 | 3112 | 34 [33] | [33] 34 | [pflD]–[pflC] | [pflD],[pflC] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 16653 | NA (NA) | 4 (0.050) | 4/244 | NT | NA | noncoding (1267/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 16691 | NA (NA) | noncoding (1305/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | = 274347 | NA (NA) | 4 (0.050) | 4/250 | NT | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274354 | NA (NA) | noncoding (796/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 4 (0.050) | 4/240 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 3 (0.040) | 3/244 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1063031 = | 82 (0.940) | 6 (0.070) | 6/252 | NT | 7.1% | coding (745/921 nt) | cbpA | DnaK co‑chaperone; curved DNA‑binding protein |
| ? | NC_000913 | 1063051 = | 78 (0.920) | coding (725/921 nt) | cbpA | DnaK co‑chaperone; curved DNA‑binding protein | |||||
| * | ? | NC_000913 | 1207790 = | 30 (0.340) | 19 (0.250) | 19/226 | NT | 33.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 49 (0.640) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 29 (0.330) | 16 (0.210) | 15/226 | NT | 30.1% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 49 (0.640) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1366959 = | 62 (0.710) | 4 (0.050) | 4/244 | NT | 6.3% | coding (954/978 nt) | pspF | psp operon transcriptional activator |
| ? | NC_000913 | 1367004 = | 61 (0.740) | coding (909/978 nt) | pspF | psp operon transcriptional activator | |||||
| * | ? | NC_000913 | = 1841740 | 50 (0.570) | 4 (0.050) | 4/246 | NT | 7.0% | coding (251/408 nt) | nudG | CTP pyrophosphohydrolase; also hydrolyzes 2‑hydroxy‑dATP, 8‑hydroxy‑dGTP, 5‑hydroxy‑CTP, dCTP and 5‑methyl‑dCTP |
| ? | NC_000913 | = 1841768 | 58 (0.700) | coding (279/408 nt) | nudG | CTP pyrophosphohydrolase; also hydrolyzes 2‑hydroxy‑dATP, 8‑hydroxy‑dGTP, 5‑hydroxy‑CTP, dCTP and 5‑methyl‑dCTP | |||||
| * | ? | NC_000913 | = 2866486 | NA (NA) | 5 (0.060) | 6/232 | NT | NA | noncoding (8/18 nt) | REP199 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP199 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 2866488 | NA (NA) | noncoding (10/18 nt) | REP199 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP199 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 3299608 | 70 (0.800) | 5 (0.060) | 5/238 | NT | 6.9% | coding (308/444 nt) | yhbP | UPF0306 family protein |
| ? | NC_000913 | = 3299630 | 70 (0.870) | coding (286/444 nt) | yhbP | UPF0306 family protein | |||||
| * | ? | NC_000913 | = 3620116 | NA (NA) | 3 (0.040) | 3/246 | NT | 100% | coding (925/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620152 | 0 (0.000) | coding (961/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 4171761 | 116 (1.330) | 10 (0.120) +TAG |
4/252 | NT | 7.7% | intergenic (+5/‑296) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913 | = 4213198 | 131 (1.500) | intergenic (+39/‑36) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 4603858 | 105 (1.210) | 6 (0.070) | 6/246 | NT | 5.4% | coding (382/726 nt) | yjjQ | putative transcriptional regulator |
| ? | NC_000913 | = 4603865 | 112 (1.350) | coding (389/726 nt) | yjjQ | putative transcriptional regulator | |||||
| * | ? | NC_000913 | 4607519 = | 80 (0.920) | 6 (0.070) | 6/252 | NT | 7.3% | coding (182/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
| ? | NC_000913 | 4607556 = | 74 (0.870) | coding (145/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent | |||||