BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1697644	89 (1.100)	3 (0.040)	3/242	NT	3.6%	coding (397/768 nt)	hdhA	7‑alpha‑hydroxysteroid dehydrogenase, NAD‑dependent
*	?	NC_000913	= 1697668	78 (1.040)	3 (0.040)	3/242	NT	3.6%	coding (373/768 nt)	hdhA	7‑alpha‑hydroxysteroid dehydrogenase, NAD‑dependent
Rejected: Frequency below/above cutoff threshold.

Only 100 of 124 total aligned reads displayed.

TATTTTTTTCACCCAGGTCAAACGCCATATTTCTGACCAGATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGTTTAGGTCCACCGCCACCGGCGTTGTTAACCAGAATATCAACTTTACCCAGCTTACT  >  NC_000913/1697497‑1697791

tatTTTTTTCACCCAGGTCAAACGCCATATTTCTGACCAGATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTATGCCGCCATAGAAGTGATGGTCAGAATAACGCAACCGCCATTTTTTTCAA‑‑tt                                                                                                                                                    >  3:308520/1‑149 (MQ=255)

     ttttCACCCAGGTCAAACGCCATATTTCTGACCAGATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTgg                                                                                                                                               >  1:191251/1‑149 (MQ=255)

          aCCCAGGTCAAACGCCATATTTCTGACCAGATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGcaa                                                                                                                                          >  3:889/1‑149 (MQ=255)

                gTCAAACGCCATATTTCTGACCAGATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTg                                                                                                                                                >  6:346383/1‑137 (MQ=255)

                gTCAAACGCCATATTTCTGACCAGATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGtt                                                                                                                                    <  8:340739/149‑1 (MQ=255)

                gTCAAACGCCATATTTCTGACCAGATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGtt                                                                                                                                    <  4:2052/149‑1 (MQ=255)

                gTCAAACGCCATATTTCTGACCAGATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGtt                                                                                                                                    <  2:219986/149‑1 (MQ=255)

                gTCAAACGCCATATTTCTGACCAGATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGtt                                                                                                                                    <  3:11054/149‑1 (MQ=255)

                 tCAAACGCCATATTTCTGACCAGATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTATCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTtg                                                                                                                                   <  2:254069/149‑1 (MQ=255)

                   aaaCGCCATATTTCTGACCAGATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTtgt                                                                                                                                  <  4:889/148‑1 (MQ=255)

                   aaaCGCCATATTTCTGACCAGATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTtgt                                                                                                                                  >  2:109996/1‑148 (MQ=255)

                   aaaCGCCATATTTCTGACCAGATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTtgt                                                                                                                                  <  2:36331/148‑1 (MQ=255)

                   aaaCGCCATATTTCTGACCAGATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTtgt                                                                                                                                  >  2:5686/1‑148 (MQ=255)

                   aaaCGCCATATTTCTGACCAGATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTtgt                                                                                                                                  <  4:234140/148‑1 (MQ=255)

                     aCGCCATATTTCTGACCAGATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTTTTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGa                                                                                                                                >  1:300018/1‑148 (MQ=255)

                         cATTTTTCTGACCAGATGACTTGCCGCAGCTTTATTTGATTCATTTGTAGTCATTTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGat                                                                                                                           >  2:57704‑M2/1‑147 (MQ=255)

                         cATATTTCTTACCATATGACTTTCCGCATATTTAGATGATTCATAGGAACTCATGTTTATATTTTTATTTTCTGCCTCCATAGAAGTGATGGTCAGAATAACGCCACCGACATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGat                                                                                                                           >  5:252749‑M2/1‑147 (MQ=255)

                         cATATTTCTGACCAGATGACTGGCCGCAGATTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGACATTTTTTTCAA‑‑TTTCTGGCGAAACAAGTTGTTACa                                                                                                                              >  6:9895/1‑146 (MQ=255)

                         cATATTTCTGAACAGATGACTGGACTCAGCTTTAGATGATGAATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCAACCGCAATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGa                                                                                                                            >  5:9895‑M2/1‑147 (MQ=255)

                           tatTTCTGACCAGATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGatg                                                                                                                          <  3:261277‑M2/148‑4 (MQ=255)

                                 tGACCAGATGACTGGCCGCAGCTTTAGATGATGCATATTAAGTGATGTTTATATTTTTATTTTCTGCCGCAATAGAAGTGATGGTCAGAATAACGCCACGGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGatggaaaaaa                                                                                                                   >  4:308520‑M2/1‑139 (MQ=255)

                                   cccAGATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAg                                                                                                                  <  6:30342/147‑1 (MQ=255)

                                   aCCAGATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGatggaaaaa                                                                                                                    >  8:72566‑M2/1‑137 (MQ=255)

                                    ccAGATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGaa                                                                                                                <  1:157488/149‑1 (MQ=255)

                                     cAGCTGACTGGCAGCAGCTTTAGAGGATGCATAGGAAGGCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑Tctgtcacaacttgttgcgccagaaatggaaaaaaatgg                                                                                                               <  5:202603‑M1/149‑39 (MQ=255)

                                     cAGATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGaa                                                                                                                >  3:210686/1‑148 (MQ=255)

                                      aGATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGaaaa                                                                                                              >  4:203970/1‑149 (MQ=255)

                                       gATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGaaaa                                                                                                              >  5:339275/1‑148 (MQ=255)

                                       gATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAac                                                                                                             <  1:5686/149‑1 (MQ=255)

                                       gATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAac                                                                                                             <  2:151267/149‑1 (MQ=255)

                                       gATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAac                                                                                                             <  1:109996/149‑1 (MQ=255)

                                          gACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAacac                                                                                                           <  2:300018/148‑1 (MQ=255)

                                           aCTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACAt                                                                                                         <  7:192775/149‑1 (MQ=255)

                                            cTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACAtt                                                                                                        <  2:367717/149‑1 (MQ=255)

                                            cTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACAtt                                                                                                        <  3:284798/149‑1 (MQ=255)

                                             tGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGaaaa                                                                                                              >  4:252373/1‑142 (MQ=255)

                                             tGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGaaaa                                                                                                              <  3:252373/142‑1 (MQ=255)

                                             tGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACAtt                                                                                                        >  1:374177/1‑148 (MQ=255)

                                               gCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCa                                                                                                      <  1:52468/148‑1 (MQ=255)

                                                ccGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACTCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAAAACATTCatt                                                                                                    >  3:46998/1‑147 (MQ=255)

                                                       tttAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCAt                                                                                                >  1:15694/1‑146 (MQ=255)

                                                       tttAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCAt                                                                                                <  2:15694/146‑1 (MQ=255)

                                                              gatgCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑T‑‑CTGTCACAACTTGTTGCGCCAGaaatggaaaaaaatggcggtggc                                                                                                      <  2:57131‑M2/131‑24 (MQ=255)

                                                              gatgCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑T‑‑CTGTCACAACTTGTTGCGCCAGaaatggaaaaaaatggcggtggc                                                                                                      >  1:57131‑M2/1‑108 (MQ=255)

                                                                   aTAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGat                                                                                                                           <  6:315665‑M2/107‑3 (MQ=255)

                                                                   aTAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGat                                                                                                                           >  5:315665‑M2/1‑105 (MQ=255)

                                                                   aTAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAAt                                                                                 >  7:72107/1‑149 (MQ=255)

                                                                     aGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTc                                                                                                  <  3:211929/130‑1 (MQ=255)

                                                                     aGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATcc                                                                               >  6:205049/1‑149 (MQ=255)

                                                                       gAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGCCAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGc                                                                             >  6:168803/1‑149 (MQ=255)

                                                                       gAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAac                                                                                                             >  2:209317/1‑117 (MQ=255)

                                                                       gAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGAAGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAac                                                                                                             <  1:209317/117‑1 (MQ=255)

                                                                         aGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCa                                                                           <  7:50381/149‑1 (MQ=255)

                                                                          gTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCAt                                                                          <  3:167928/149‑1 (MQ=255)

                                                                               gTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCa                                                                     >  5:188564/1‑149 (MQ=255)

                                                                                tttATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCat                                                                    <  6:339275/149‑1 (MQ=255)

                                                                                 ttATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTgg                                                                       >  2:206210/1‑145 (MQ=255)

                                                                                 ttATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTgg                                                                       <  1:206210/145‑1 (MQ=255)

                                                                                 ttATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCAACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCata                                                                   >  8:293911/1‑149 (MQ=255)

                                                                                     atttttattttCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCa                                                                >  7:254799/1‑148 (MQ=255)

                                                                                      tttttattttCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCaaa                                                              >  7:64832/1‑149 (MQ=255)

                                                                                       ttttattttCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAACTCACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAAc                                                             >  6:188719/1‑149 (MQ=255)

                                                                                       ttttattttCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGACCGGCGAAAATCCGACAGTGGCATATCacac                                                             >  8:134674/1‑149 (MQ=255)

                                                                                         ttattttCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACgg                                                           >  7:4634/1‑149 (MQ=255)

                                                                                            ttttCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGtt                                                         >  1:38859/1‑148 (MQ=255)

                                                                                                  gccgccATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGTTTAGGTc                                                   >  4:229377/1‑148 (MQ=255)

                                                                                                  gccgccATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGTTTAGGTc                                                   <  3:229377/148‑1 (MQ=255)

                                                                                                   ccgccATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGTTTAGGTcca                                                 >  1:199515/1‑149 (MQ=255)

                                                                                                       cATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGTTTAGGTccaccgc                                             >  8:18793/1‑149 (MQ=255)

                                                                                                         tAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGTTTAGGTccaccgcca                                           >  4:140772/1‑149 (MQ=255)

                                                                                                          aGAAGTGAT‑GTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGTTTAGGTccaccgccacc                                         >  3:1479/1‑149 (MQ=255)

                                                                                                           gAAGTGATGGTGAGAATAACTCCACCGCCATTTTTTTACA‑‑TTTCTGGCGCAACAAGTTGTGACAGATTGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTTGCATATCAAACGGTTTAGGTccaccgccacc                                         <  8:64832/149‑1 (MQ=255)

                                                                                                             aGTTATGGGCAGAATAACGCCAACGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCAAAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGTTTAGGTCCACCGCCACCgg                                       <  8:76316/149‑1 (MQ=255)

                                                                                                                   ggTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAACCGGTTTAGGTCCACCGCCACGGGCggtgt                                 >  4:350175/1‑149 (MQ=255)

                                                                                                                         aaTAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGTTTAGGTCCACCGCCACCGGCGTTGTTAACCa                           <  4:1479/149‑1 (MQ=255)

                                                                                                                           tAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGTTTAGGTCCACCGCCACCGGCGTTGTTAACCAg                          >  8:109882/1‑148 (MQ=255)

                                                                                                                            aaCGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGTTTAGGTCCACCGCCACCGGCGTTG‑TAACCAGaa                        >  7:283406/1‑148 (MQ=255)

                                                                                                                               gCCACCGCCATTTTTTTCCATTTctggcgcaacaagttgtgacagatggaaaaaaatggcggtggcgttattctgaccatcacttctatggcggcagaaaataaaaatataaacatgacttcctatgcatc                                         <  2:57131‑M1/131‑109 (MQ=255)

                                                                                                                                ccACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGTTTAGGTCCACCGCCACCGGCGTTGTTAACCAGAatat                     >  5:1100/1‑148 (MQ=255)

                                                                                                                                ccACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGTTTAGGTCCACCGCCACCGGCGTTGTTAACCAGAatat                     >  5:6161/1‑148 (MQ=255)

                                                                                                                                ccACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGTTTAGGTCCACCGCCACCGGCGTTGTTAACCAGAATATc                    <  8:4634/149‑1 (MQ=255)

                                                                                                                                 cACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGTTTAGGTCCACCGCCACCGGCGTTGTTAACCAGAATATc                    >  5:209585/1‑148 (MQ=255)

                                                                                                                                    cGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAACCACATTCAGTTCATAAGCACGGCGGAAATCCGGCATTGGCATATCAAACGGGTTAGGTCCACCGCCACCGGCGTTGTTAACCAGATTATcgcgt                >  8:288307/1‑145 (MQ=255)

                                                                                                                                     gCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGTTTAGGTCCACCGCCACCGGCGTTGTTAACCAGAATATCAACtt               >  3:88914/1‑149 (MQ=255)

                                                                                                                                      ccATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGatggaaaaaaatggcggtggcgttattctgaccatcacttctatggcggcagaaaataaaaatataaacatgccttcctatgcatcctctaaagctgctgccagtcagctg              <  5:202603‑M2/149‑112 (MQ=255)

                                                                                                                                       cATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAAAACATTCAGTGCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGTTGAGGTCCACCGCCACCGGCGTTGGTACCCAGAATCGCAACTTTa             >  6:335364/1‑149 (MQ=255)

                                                                                                                                        aTTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGTTTAGGTCCACCGCCACCGGCgttg                                  >  3:34847/1‑127 (MQ=255)

                                                                                                                                        aTTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGTTTAGGTCCACCGCCACCGGCGTTGTTAACCAGAATATCAACTTTAc            >  6:21941/1‑149 (MQ=255)

                                                                                                                                          ttttttCCA‑‑Tctgtcacaacttgttgcgccagaaatggaaaaaaatggccgtggcgttattctgaccatcacttctattgcggcagaaaataaaaatataaacatcacttaatatgcatcatctaaagctgcggccagtcatctggtca          >  4:308520‑M1/1‑10 (MQ=255)

                                                                                                                                           tttttCCA‑‑Tctgtcacaacttgttgcgccagaaatggaaaaaaatggcggtggcgttattctgaccatcacttctatggcggcagaaaataaaaatataaacatgacttcctatgcatcatctaaagctgcggccagtcatctggt            >  8:72566‑M1/1‑9 (MQ=255)

                                                                                                                                            ttttCCA‑‑Tctgtcacaacttgttgcgccagaaatggaaaaaaatggcggtggcgttattctgaccatcacttctatggcggcagaaaataaaaatataaacatgacttcctatgcatcatctaaagctgcggccagtcatctggtc           <  8:192775‑M1/146‑139 (MQ=255)

                                                                                                                                                ccA‑‑Tctgtcacaacttgttgcgccagaaatggaaaaaaatggcggtggcgttattctgaccatcacttctatggcggcagaaaataaaaatataaacatgacttcctatgcatcatctaaagctgcggccagtcatctggtcagaaata    >  2:243536‑M1/1‑4 (MQ=255)

                                                                                                                                                 cA‑‑Tctgtcacaacttgttgcgccagaaatggaaaaaaatggcggtggcgttattctgaccatcacttctatggcggcagaaaataaaaatataaacatgacttcctatgcatcatctaaagctgcggccagtcatctggtcagaaata    <  3:261277‑M1/148‑146 (MQ=255)

                                                                                                                                                 cA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGTTTAGGTCCACCGCCACCGGCGTTGTTAACCAGAATATCAACTTTACCCAGCTTAc   >  3:17438/1‑149 (MQ=255)

                                                                                                                                                  a‑‑Tctgtcacaacttgttgcgccagaaatggaaaaaaatggcggtggcgttattctgaccatcacttctatggcggcagaaaataaaaatataaacatgacttcctat                                            >  5:315665‑M1/1‑2 (MQ=255)

                                                                                                                                                  a‑‑Tctgtcacaacttgttgcgccagaaatggaaaaaaatggcggtggcgttattctgaccatcacttctatggcggcagaaaataaaaatataaaaatgactacaaatgaatcaaataaagctgcggcaagtcatctggtcagaaaaatg  >  2:57704‑M1/1‑2 (MQ=255)

                                                                                                                                                  a‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGAATATCAAACGGTTTAGGTCCAGCGCCACCGGCGTTGTTAACCAGAATATCAACTTTACCCAGCTTAc   <  6:75441/148‑1 (MQ=255)

                                                                                                                                                  a‑‑TTTCTGGCGCAAAAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGTTTAGGTCCACCGCCACCGGCGTTGTTAACCAGAATATCAACTTTACCCAGCTTACt  <  4:46998/149‑1 (MQ=255)

                                                                                                                                                     tttCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGTTTAGGTCCACCGCCACCGGCGTTGTTAACCAGAATATCAACTTTACCCAGCTTACt  >  1:188889/1‑148 (MQ=255)

                                                                                                                                                     tctgtcacaacttgttgcgccagaaatggaaaaaaattgcggttgcgttattctgaccatcacttctatggcggcagaaaataaaaatataaacatgacttcctattcatcatctaaagctgagtccagtcatctgttcagaaatatg  >  5:9895‑M1/1‑1 (MQ=255)

TATTTTTTTCACCCAGGTCAAACGCCATATTTCTGACCAGATGACTGGCCGCAGCTTTAGATGATGCATAGGAAGTCATGTTTATATTTTTATTTTCTGCCGCCATAGAAGTGATGGTCAGAATAACGCCACCGCCATTTTTTTCCA‑‑TTTCTGGCGCAACAAGTTGTGACAGATGGAAAAAAGAAAACACATTCAGTTCATAAGCACGGCGAAAATCCGCCATTGGCATATCAAACGGTTTAGGTCCACCGCCACCGGCGTTGTTAACCAGAATATCAACTTTACCCAGCTTACT  >  NC_000913/1697497‑1697791

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.