New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1562837 =	29 (0.810)	6 (0.180)	6/232	3.4	18.7%	coding (240/582 nt)	ddpX	D‑ala‑D‑ala dipeptidase, Zn‑dependent
	?	NC_000913	1562864 =	25 (0.750)					coding (213/582 nt)	ddpX	D‑ala‑D‑ala dipeptidase, Zn‑dependent
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCGTGCATTTCATCGAACCCTGCGCCCATATCGAGGATGTTCCCGTGCTCATCACGAAGCGTCAGGTCGATCGCCGTGCCACGGCTGTGATTAGAACCGACCGTCACATCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGATACGCATCGTAAATCACCAGTTGTAACCCTGACAGCTGGGCGATGCTGATACTTTTCGCCAGCGCGGTAATCGCATCCTTGTGTAACAGACAACGCGCTTGCTGATAAAT  >  NC_000913/1562697‑1562977                                                                                                                                             |                                                                                                                                             tCGTGCATTTCATCGAACCCTGCGCCCATATCGAGGATGTTCCCGTGCTCATCACGAAGCGTCAGGTCGATCGCCGTGCCACGGCTGTGATTAGAACCGACCGTCACATCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACAt                                                                                                                                      >  4:45508/1‑149 (MQ=255)   gTGCATTTCATCGAACCCTGCGCCCATATCGAGGATGTTCCCGTGCTCATCACGAAGCGTCAGGTCGATCGCCGTGCCACGGCTGTGATTAGAACCGACCGTCACATCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCg                                                                                                                                    >  5:165475/1‑149 (MQ=255)           cATCGAACCCTGCGCCCATATCGAGGATGTTCCCGTGCTCATCACGAAGCGTCAGGTCGATCGCCGTGCCACGGCTGTGATTAGAACCGACCGTCACATCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGc                                                                                                                                   >  8:100686/1‑142 (MQ=255)           cATCGAACCCTGCGCCCATATCGAGGATGTTCCCGTGCTCATCACGAAGCGTCAGGTCGATCGCCGTGCCACGGCTGTGATTAGAACCGACCGTCACATCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGc                                                                                                                                   <  7:100686/142‑1 (MQ=255)            aTCGAACCCTGCGCCCATATCGAGGATGTTCCCGTGCTCATCACGAAGCGTCAGGTCGATCGCCGTGCCACGGCTGTGATTAGAACCGACCGTCACATCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGCCTGTGCtt                                                                                                                           >  5:160359/1‑149 (MQ=255)                          ccATATCGAGGATGTTCCCGTGCTCATCACGAAGCGTCAGGTCGATCGCCGTGCCACGGCTGTGATTAGAACCGACCGTCACATCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGCCTGAGCTTGTTGTggg                                                                                                                   >  1:59079/1‑143 (MQ=255)                          ccATATCGAGGATGTTCCCGTGCTCATCACGAAGCGTCAGGTCGATCGCCGTGCCACGGCTGTGATTAGAACCGACCGTCACATCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGCCTGAGCTTGTTGTggg                                                                                                                   <  2:59079/143‑1 (MQ=255)                                       gTTCCCGTGCTCATCACGAAGCGTCAGGTCGATCGCCGTGCCACGGCTGTGATTAGAACCGACCGTCACATCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGATACGCATCGTAAATc                                                                                                 <  3:45508/148‑1 (MQ=255)                                                 tcatcaCGAAGCGTCAGGTCGATCGCCGTGCCACGGCTGTGATTAGAACCGACCGTCACATCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGCCtgtg                                                                                                                              <  6:130136/109‑1 (MQ=255)                                                 tcatcaCGAAGCGTCAGGTCGATCGCCGTGCCACGGCTGTGATTAGAACCGACCGTCACATCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGCCtgtg                                                                                                                              >  5:130136/1‑109 (MQ=255)                                                   atcaCGAAGCGTCAGGTCGATCGCCGTGCCACGGCTGTGATTAGAACCGACCGTCACATCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGCCTGTGCTTGTTGTgg                                                                                                                    >  5:98666/1‑117 (MQ=255)                                                   atcaCGAAGCGTCAGGTCGATCGCCGTGCCACGGCTGTGATTAGAACCGACCGTCACATCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGCCTGTGCTTGTTGTgg                                                                                                                    <  6:98666/117‑1 (MQ=255)                                                   atcaCGAAGCGTCAGGTCGATCGCCGTGCCACGGCTGTGATTAGAACCGACCGTCACATCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGATACGCATCGTAAATCACCAGTTGTAAc                                                                                     <  6:165475/148‑1 (MQ=255)                                                        gAAGCGTCAGGTCGATCTCAGTGCCACTGCTGTTATTAGAACCGACCGTCACATAAACAACATATTGCGGGTCTGGGCAGGCTTGCCAAAAAATCGCCTGTGCTTGTTGTGTGCGATACGCATCGTAAATCACCAGTTGTAACACtta                                                                                >  6:36239/1‑146 (MQ=255)                                                                             tGCCACGGCTGTGATTAGAACCGACAGTCACATCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGACTGTGCTTGTTGTGGGCTATACGCATCGTAAATCACCATTTGTAACCCTGACAGCTGGTCGATGCTGATACtt                                                          <  5:36239/149‑1 (MQ=255)                                                                               ccACGGCTGTGATTAGAACCGACCGTCACATCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGATACGCATCGTAAATCACCAGTTGTAACCCTGACAGCTGGGCGATGCTGATACtttt                                                        >  2:91644/1‑149 (MQ=255)                                                                                cACGGCTGTGATTAGAACCGACCGTCACATCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGATACGCATCGTAAATCACCAGTTGTAACCCTGACAGCTGGGCGATGCTGATACTTTTc                                                       <  1:91644/149‑1 (MQ=255)                                                                                cACGGCTGTGATTAGAACCGACCGTCACATCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGATACGCATCGTAAATCACCAGTTGTAACCCTGACAGCTGGGCGATGCTGATACTTTTc                                                       <  1:74842/149‑1 (MQ=255)                                                                                          aTTAGAACCGACCGTCACATCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGATACGCATCGTAAATCACCAGTTGTAACCCTGACAGCTGGGCGATGCTGATACTTTTCGCCAGcgcg                                              <  6:160359/148‑1 (MQ=255)                                                                                              gAACCGACCGTCACATCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGATACGCATCGTAAATCACCAGTTGTAAcc                                                                                    <  7:27996/106‑1 (MQ=255)                                                                                              gAACCGACCGTCACATCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGATACGCATCGTAAATCACCAGTTGTAAcc                                                                                    >  8:27996/1‑106 (MQ=255)                                                                                                          acaTCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGATACGCATCGTAAATCACCAGTTGTAACCCTGACAGCTGGGCGATGCTGATACTTTTCGCCAGCGCgg                                             <  2:196767/133‑1 (MQ=255)                                                                                                          acaTCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGATACGCATCGTAAATCACCAGTTGTAACCCTGACAGCTGGGCGATGCTGATACTTTTCGCCAGCGCgg                                             >  1:196767/1‑133 (MQ=255)                                                                                                           caTCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGATACGCATCGTAAATCACCAGTTGTAACCCTGACAGCTGGGCGATGCTGATACTTTTCGCCAGCGCGGTAATCGCATCCTtgtg                             >  8:117767/1‑148 (MQ=255)                                                                                                               aacaacATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGATACGCATCGTAAATCACCAGTTGTAACCCTGACAGCTGGGCGATGCTGATACTTTTCGCCAGCGCGGTAATCGCATCCTTGTGTaa                          >  2:24467/1‑147 (MQ=255)                                                                                                                          gCGGGTCTGGGCAGGCTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGATACGCATCGTAAATCACCAGTTGTAACCCTGACAGCTGGGCGATGCTGATACTTTTCGCCAGCGCGGTAATCGCATCCTTGTGTAACAGACAACgcgc              <  1:24467/148‑1 (MQ=255)                                                                                                                                     cAGGCTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGATACGCATCGTAAATCACCAGTTGTAACCCTGACAGCTGGGCGATGCTGATACTTTTCGCCAGCGCGGTAATCGCATCCTTGTGTAACAGACAACGCGCTTGCTGATAAAt  <  7:117767/149‑1 (MQ=255)                                                                                                                                        gCTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGATACGCATCGTAAATCACCAGTTGTAACCCTGACAGCTGGGCGATGCTGATACTTTTCGCCAGCGCGGTAATCGCATCCtt                                >  2:76704/1‑116 (MQ=255)                                                                                                                                        gCTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGATACGCATCGTAAATCACCAGTTGTAACCCTGACAGCTGGGCGATGCTGATACTTTTCGCCAGCGCGGTAATCGCATCCtt                                <  1:76704/116‑1 (MQ=255)                                                                                                                                             |                                                                                                                                             TCGTGCATTTCATCGAACCCTGCGCCCATATCGAGGATGTTCCCGTGCTCATCACGAAGCGTCAGGTCGATCGCCGTGCCACGGCTGTGATTAGAACCGACCGTCACATCAACAACATATTGCGGGTCTGGGCAGGCTTGCCACAACATCGCCTGTGCTTGTTGTGGGCGATACGCATCGTAAATCACCAGTTGTAACCCTGACAGCTGGGCGATGCTGATACTTTTCGCCAGCGCGGTAATCGCATCCTTGTGTAACAGACAACGCGCTTGCTGATAAAT  >  NC_000913/1562697‑1562977

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.