| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 394471 | 93 (1.120) | 3 (0.040) | 3/234 | NT | 3.2% | intergenic (+53/‑35) | yaiT/yaiV | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator |
| ? | NC_000913 | = 394475 | 98 (1.310) | intergenic (+57/‑31) | yaiT/yaiV | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTCACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/394317‑394471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taatgcccgtcaaATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCGCTG < NC_000913/394475‑394331 TTCACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACGTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGC > 2:175452/1‑148 TCACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCC > 4:300858/1‑148 CACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCC < 7:153836/147‑1 CCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGT > 6:352935/1‑148 AAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTC > 7:348636/1‑147 AAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTC > 6:236715/1‑147 AAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGGGGGTGTTAAATATACCTGGTACTATTCTTCACGCCGAAGAAATACTGGGAATTTAATCTAAATAATGCCCGTC > 4:261725/1‑147 AGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGGGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAA < 6:258390/148‑1 GGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGATCGCGGA > 6:47386/1‑148 TCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTG < 5:99011/142‑1 TCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTAACAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTG > 6:99011/1‑142 AATGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGATGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTA > 3:291701/1‑148 ATGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTAT < 3:35099/148‑1 ATGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTAT < 4:265912/148‑1 ATGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTAT < 1:139352/148‑1 ATGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTA < 5:275474/147‑1 CCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGG > 1:172609/1‑148 CCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACAAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCGTCGGTATAGG > 7:323255/1‑148 CCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGC > 7:63925/1‑148 AAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCGCTG > 3:238538/1‑147 TTCACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/394317‑394471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taatgcccgtcaaATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCGCTG < NC_000913/394475‑394331 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |