New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 39447193 (1.120)3 (0.040) 3/234 NT 3.2% intergenic (+53/‑35) yaiT/yaiV pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator
?NC_000913 = 394475 98 (1.310)intergenic (+57/‑31) yaiT/yaiV pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator
Rejected: Frequency below/above cutoff threshold.

Only 100 of 126 total aligned reads displayed.

AGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTTATATTTTCCAGTGA  >  NC_000913/394324‑394618
                                                                                                                                                   |                                                                                                                                                   
aGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGGGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAA                                                                                                                                                     <  6:258390‑M1/148‑1 (MQ=255)
   aCTTCAGCGCCTATACCGATGCTAACTACCTCTGTGGTGGTGACGTAGATCAAGACTGGTCCGCTAACGTGGGTTTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGa                                                                                                                                                  <  5:299881/148‑1 (MQ=255)
       cAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATtt                                                                                                                                               >  3:238538‑M2/1‑145 (MQ=255)
            ccTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATttgacggg                                                                                                                                         >  1:172609‑M2/1‑140 (MQ=255)
            ccTATACCGACGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTTGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATttgacggg                                                                                                                                         >  7:323255‑M2/1‑140 (MQ=255)
               ataCCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATttgacgggcat                                                                                                                                      <  4:265912‑M2/148‑12 (MQ=255)
                taCCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATttgacgggcat                                                                                                                                      <  5:275474‑M2/147‑12 (MQ=255)
                   cGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCTCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACt                                                                                                                                  <  4:28334/148‑1 (MQ=255)
                        cTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCaaa                                                                                                                             <  5:236715/148‑1 (MQ=255)
                        cTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCaa                                                                                                                              <  8:348636/147‑1 (MQ=255)
                          aaCTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAg                                                                                                                            >  4:224013/1‑147 (MQ=255)
                           aCTACCTCGGTGGTGGTGACGGAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAg                                                                                                                            <  8:382355/146‑1 (MQ=255)
                             tACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCTAGCATTTGACGGGCATTACTGCAAAGGAcg                                                                                                                        >  5:50753/1‑148 (MQ=255)
                               ccTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGAcgcg                                                                                                                      >  7:142844/1‑148 (MQ=255)
                                 tCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTGAAGGATTTGCCGGGCATTACTGCAAAGGACgcgc                                                                                                                     >  2:37420/1‑147 (MQ=255)
                                       gtggtgACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCAGTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGtt                                                                                                              <  1:349789/148‑1 (MQ=255)
                                       gtggtgACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGtt                                                                                                              <  2:61531/148‑1 (MQ=255)
                                       gtggtgACGTAGAGCAAGACTCGTCCGCGACCGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGGCACGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGtt                                                                                                              <  2:248386/148‑1 (MQ=255)
                                        tggtgACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTa                                                                                                             <  3:265912/148‑1 (MQ=255)
                                            gACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTg                                                                                                         >  3:21140/1‑148 (MQ=255)
                                              cGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTa                                                                                                       <  7:201230/148‑1 (MQ=255)
                                              cGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTa                                                                                                       <  5:48886/148‑1 (MQ=255)
                                                tAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGt                                                                                                     <  3:69103/148‑1 (MQ=255)
                                                  gATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGtt                                                                                                    <  7:121558/147‑1 (MQ=255)
                                                   aTCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTa                                                                                                   >  8:237776/1‑147 (MQ=255)
                                                    tCAATACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATTCTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTaaa                                                                                                 <  3:193024/148‑1 (MQ=255)
                                                    tCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGCATTTGACGTTCATTACTGCATAGGCCGCGCAAATGTTATCTGTAGTTaaa                                                                                                 >  4:1885/1‑148 (MQ=255)
                                                     cAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGTTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCttgacgggcattatttagattaaattaccagtatttcttcgga                                                                                                      >  6:99011‑M2/1‑99 (MQ=255)
                                                     cAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCttgacgggcattatttagattaaattaccagtatttcttcgga                                                                                                      <  5:99011‑M2/142‑44 (MQ=255)
                                                         aCTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACctct                                                                                            >  3:170874/1‑148 (MQ=255)
                                                         aCTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACctct                                                                                            <  3:300858/148‑1 (MQ=255)
                                                             gTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAg                                                                                        >  1:113007/1‑148 (MQ=255)
                                                              tCCGCGATCGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCttgacgggcattatttagattaaattaccagtatttcttcggagtgaagaatattacc                                                                                       >  6:47386‑M2/1‑90 (MQ=255)
                                                              tCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACCGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAgg                                                                                       <  4:239574/148‑1 (MQ=255)
                                                                   gAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAAttt                                                                                  <  3:344308/148‑1 (MQ=255)
                                                                    aaCGTGGGTGTTTAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTg                                                                                 >  7:70340/1‑148 (MQ=255)
                                                                        tGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGt                                                                               >  1:121753/1‑146 (MQ=255)
                                                                        tGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGt                                                                               >  3:319046/1‑146 (MQ=255)
                                                                             gtTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTc                                                                         >  5:141564/1‑147 (MQ=255)
                                                                             gtTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTc                                                                         >  4:227282/1‑147 (MQ=255)
                                                                               tAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGa                                                                       >  1:11343/1‑147 (MQ=255)
                                                                               tAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGa                                                                       >  4:260162/1‑147 (MQ=255)
                                                                                   tataCCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAAt                                                                  >  2:17421/1‑148 (MQ=255)
                                                                                   tataCCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAAt                                                                  >  8:220343/1‑148 (MQ=255)
                                                                                     taCCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATg                                                                 <  1:351477/147‑1 (MQ=255)
                                                                                     taCCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGt                                                                <  4:35099/148‑1 (MQ=255)
                                                                                          ggTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAggatttgacgggcattatttagattaaattaccagtatttcttcggagtgaagaatattaccaggtatatttaacacccacgatcgcgga                                                           >  6:47386‑M1/1‑58 (MQ=255)
                                                                                           gTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAGATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTc                                                           >  2:315111/1‑147 (MQ=255)
                                                                                           gTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTc                                                           <  6:275474/147‑1 (MQ=255)
                                                                                            ttatatTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCGGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTcc                                                          <  5:283403/145‑1 (MQ=255)
                                                                                            tAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTc                                                           >  3:361970/1‑146 (MQ=255)
                                                                                                atTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATa                                                     >  6:329917/1‑148 (MQ=255)
                                                                                                atTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTAAGGAATTTGGTAAGATCGATAAATGTTTGTCCAGATa                                                     >  5:107453/1‑148 (MQ=255)
                                                                                                   cttcACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGAATAGACCGGCATTACTGCAAAGGACGCGCAAATGTTATCTGAAGATAAACCTCTACATGAATTTTGTAAGCTCGATAAATGTTAGTACAGATACgg                                                  >  2:305512/1‑148 (MQ=255)
                                                                                                    ttcACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGtt                                                               <  8:282126/134‑1 (MQ=255)
                                                                                                    ttcACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGtt                                                               >  7:282126/1‑134 (MQ=255)
                                                                                                    ttcACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACgg                                                  >  4:262346/1‑147 (MQ=255)
                                                                                                      cACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACgg                                                  <  2:121753/145‑1 (MQ=255)
                                                                                                         tCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAggatttgacgggcattatttagattaaattaccagtatttcttcggagtgaagaatattaccaggtatatttaacacccacgttcgcggaccagtcttg                                                  <  5:99011‑M1/142‑100 (MQ=255)
                                                                                                          ccGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACgcgc                                           >  1:221465/1‑148 (MQ=255)
                                                                                                          ccGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACgcgc                                           >  7:228912/1‑148 (MQ=255)
                                                                                                            gaagaaATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCtt                                         >  4:226801/1‑148 (MQ=255)
                                                                                                            gaagaaATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCtt                                         <  3:224013/148‑1 (MQ=255)
                                                                                                             aagaaATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTc                                        >  7:150502/1‑148 (MQ=255)
                                                                                                              agaaATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTc                                        >  3:224227/1‑147 (MQ=255)
                                                                                                               aaaaTACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTc                                                                                          <  2:274298/95‑1 (MQ=255)
                                                                                                               aaaaTACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTc                                                                                          >  1:274298/2‑96 (MQ=255)
                                                                                                                   tACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGAAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGttt                                  <  1:17421/148‑1 (MQ=255)
                                                                                                                    aCTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGttt                                  >  3:117666/1‑147 (MQ=255)
                                                                                                                       ggTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTtaat                               >  7:111313/1‑147 (MQ=255)
                                                                                                                       ggTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTtaat                               >  4:238453/1‑147 (MQ=255)
                                                                                                                       ggTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTtaat                               >  2:187628/1‑147 (MQ=255)
                                                                                                                        gTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTtaata                              <  4:224227/147‑1 (MQ=255)
                                                                                                                                aTCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAg                      >  4:348921/1‑147 (MQ=255)
                                                                                                                                 tCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGc                     >  4:80317/1‑147 (MQ=255)
                                                                                                                                  cTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGGGCTTCGAGTTTAATAAGGATAAGc                     >  6:236157/1‑146 (MQ=255)
                                                                                                                                     aataatGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCTATTGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAATTGTTTGTCCAGATACGGTACGCGCTTCGAGTTTATTAATGAAAAGCAAGt                 >  3:165185/1‑147 (MQ=255)
                                                                                                                                     aataatGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCaa                   <  7:237776/145‑1 (MQ=255)
                                                                                                                                     aataatGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCa                    <  3:227282/144‑1 (MQ=255)
                                                                                                                                      ataatGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTta               <  1:175452/148‑1 (MQ=255)
                                                                                                                                       taatGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTtat              <  4:117666/148‑1 (MQ=255)
                                                                                                                                        aatGCCCGTCAAatccttgacgggcattatttagattaaattaccagtatttcttcggagtgatgaatattaccaggtatatttaacacccacgttcgcggaccagtcttgatctacgtcaccaccaccgaggtagttagcatcggta             >  3:291701‑M1/1‑12 (MQ=255)
                                                                                                                                        aatGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTtata             >  2:252495/1‑148 (MQ=255)
                                                                                                                                         atGCCCGTCAAatccttgacgggcattatttagattaaattaccagtatttcttcggagtgaagaatattaccaggtatatttaacacccacgttcgcggaccagtcttgatctacgtcaccaccaccgaggtagttagcatcggtat            <  3:35099‑M1/148‑138 (MQ=255)
                                                                                                                                         atGCCCGTCAAatccttgacgggcattatttagattaaattaccagtatttcttcggagtgaagaatattaccaggtatatttaacacccacgttcgcggaccagtcttgatctacgtcaccaccaccgaggtagttagcatcggtat            <  1:139352‑M1/148‑138 (MQ=255)
                                                                                                                                         atGCCCGTCAAatccttgacgggcattatttagattaaattaccagtatttcttcggagtgaagaatattaccaggtatatttaacacccacgttcgcggaccagtcttgatctacgtcaccaccaccgaggtagttagcatcggta             <  5:275474‑M1/147‑137 (MQ=255)
                                                                                                                                            cccGTCCAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTTATAtttt         <  2:113007/147‑1 (MQ=255)
                                                                                                                                            cccGTCAAatccttgacgggcattatttagattaaattaccagtatttcttcggagtgaagaatattaccaggtatatttaacacccacgttcgcggaccagtcttgatctacgtcaccaccaccgaggtagttagcatcggtatagg         >  1:172609‑M1/1‑8 (MQ=255)
                                                                                                                                            cccGTCAAatccttgacgggcattatttagattaaattaccagtatttcttcggagtgaagaatattaccaggtatatttaacacccacgttcgcggacaagtcttgatctacgtcaccaccaccgaggtagttagcgtcggtatagg         >  7:323255‑M1/1‑8 (MQ=255)
                                                                                                                                             ccGTCAAatccttgacgggcattatttagattaaattaccagtatttcttcggagtgaagaatattaccaggtatatttaacacccacgttcgcggaccagtcttgatctacgtcaccaccaccgaggtagttagcatcggtataggc        >  7:63925‑M1/1‑7 (MQ=255)
                                                                                                                                             ccGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCaa                                                                                                                   <  4:192765/41‑1 (MQ=255)
                                                                                                                                             ccGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCaa                                                                                                                   >  3:192765/1‑41 (MQ=255)
                                                                                                                                                tCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTTATATTTTCCAg     <  3:80317/148‑1 (MQ=255)
                                                                                                                                                 cAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTTATATTTTCCAGt    >  8:141566/1‑148 (MQ=255)
                                                                                                                                                  aaatccttgacgggcattatttagattaaattaccagtatttcttcggagtgaagaatattaccaggtatatttaacacccacgttcgcggaccagtcttgatctacgtcaccaccaccgaggtagttagcatcggtataggcgctg    >  3:238538‑M1/1‑2 (MQ=255)
                                                                                                                                                  aaGGATTTGACTGTTATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTTAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTTATATTTTCCAGTg   <  4:170874/148‑1 (MQ=255)
                                                                                                                                                  aaGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTTTATTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTTATATTTTCCAGTg   <  6:50753/148‑1 (MQ=255)
                                                                                                                                                  aaGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTTATATTTTCCAGTg   <  2:221465/148‑1 (MQ=255)
                                                                                                                                                  aaGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTAGCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTTATATTTTCCAGt    >  2:311952/1‑147 (MQ=255)
                                                                                                                                                   aGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTTTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGCTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTAATATTTTCCAGTGa  >  2:330423/1‑148 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
AGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTTATATTTTCCAGTGA  >  NC_000913/394324‑394618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.