mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 32 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3778171 = | 62 (0.910) | 3 (0.050) | 3/252 | NT | 4.9% | coding (773/1656 nt) | lldP | L‑lactate permease |
| ? | NC_000913 | 3778215 = | 58 (0.890) | coding (817/1656 nt) | lldP | L‑lactate permease | |||||
| * | ? | NC_000913 | 3652036 = | NA (NA) | 3 (0.040) | 3/262 | NT | 4.4% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3838500 | 65 (0.960) | coding (253/924 nt) | yicL | EamA family inner membrane putative transporter | |||||
| * | ? | NC_000913 | 2757407 = | 71 (1.050) | 3 (0.050) | 3/240 | NT | 4.4% | intergenic (+7/+237) | intA/yfjH | CP4‑57 prophage; integrase/CP4‑57 prophage; uncharacterized protein |
| ? | NC_000913 | 2757433 = | 64 (1.030) | intergenic (+33/+211) | intA/yfjH | CP4‑57 prophage; integrase/CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | 1636654 = | 3263 (48.140) | 4 (0.060) | 4/246 | NT | 0.13% | intergenic (‑287/‑102) | nohQ/ynfO | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage |
| ? | NC_000913 | 1636687 = | 3267 (51.330) | intergenic (‑320/‑69) | nohQ/ynfO | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage | |||||
| * | ? | NC_000913 | 951207 = | 135 (1.990) | 5 (0.080) | 5/250 | NT | 3.8% | intergenic (‑127/+65) | pflA/pflB | pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase/formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
| ? | NC_000913 | 951233 = | 125 (1.930) | intergenic (‑153/+39) | pflA/pflB | pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase/formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 | |||||
| * | ? | NC_000913 | = 871513 | 120 (1.770) | 4 (0.060) | 4/250 | NT | 3.5% | coding (547/921 nt) | gsiC | glutathione ABC transporter permease |
| ? | NC_000913 | = 871541 | 107 (1.650) | coding (575/921 nt) | gsiC | glutathione ABC transporter permease | |||||
| * | ? | NC_000913 | = 817004 | 3473 (51.240) | 17 (0.260) | 10/248 | NT | 0.51% | intergenic (‑357/‑40) | ybhK/moaA | putative CofD superfamily transferase/molybdopterin biosynthesis protein A |
| ? | NC_000913 | = 817014 | 3382 (52.710) | intergenic (‑367/‑30) | ybhK/moaA | putative CofD superfamily transferase/molybdopterin biosynthesis protein A | |||||
| * | ? | NC_000913 | = 815977 | 3019 (44.540) | 9 (0.140) | 7/250 | NT | 0.30% | coding (671/909 nt) | ybhK | putative CofD superfamily transferase |
| ? | NC_000913 | = 816006 | 3196 (49.420) | coding (642/909 nt) | ybhK | putative CofD superfamily transferase | |||||
| * | ? | NC_000913 | = 814978 | 2567 (37.870) | 3 (0.050) | 3/246 | NT | 0.12% | coding (1453/2022 nt) | uvrB | exision nuclease of nucleotide excision repair, DNA damage recognition component |
| ? | NC_000913 | = 815012 | 2463 (38.700) | coding (1487/2022 nt) | uvrB | exision nuclease of nucleotide excision repair, DNA damage recognition component | |||||
| * | ? | NC_000913 | 814971 = | 2599 (38.340) | 4 (0.060) | 3/246 | NT | 0.16% | coding (1446/2022 nt) | uvrB | exision nuclease of nucleotide excision repair, DNA damage recognition component |
| ? | NC_000913 | 815021 = | 2463 (38.700) | coding (1496/2022 nt) | uvrB | exision nuclease of nucleotide excision repair, DNA damage recognition component | |||||