breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal new junction evidence (lowest skew 10 of 32 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3778171 =62 (0.910)3 (0.050) 3/252 NT 4.9% coding (773/1656 nt) lldP L‑lactate permease
?NC_000913 3778215 = 58 (0.890)coding (817/1656 nt) lldP L‑lactate permease
* ? NC_000913 3652036 =NA (NA)3 (0.040) 3/262 NT 4.4% noncoding (1195/1195 nt) IS5 repeat region
?NC_000913 = 3838500 65 (0.960)coding (253/924 nt) yicL EamA family inner membrane putative transporter
* ? NC_000913 2757407 =71 (1.050)3 (0.050) 3/240 NT 4.4% intergenic (+7/+237) intA/yfjH CP4‑57 prophage; integrase/CP4‑57 prophage; uncharacterized protein
?NC_000913 2757433 = 64 (1.030)intergenic (+33/+211) intA/yfjH CP4‑57 prophage; integrase/CP4‑57 prophage; uncharacterized protein
* ? NC_000913 1636654 =3263 (48.140)4 (0.060) 4/246 NT 0.13% intergenic (‑287/‑102) nohQ/ynfO pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage
?NC_000913 1636687 = 3267 (51.330)intergenic (‑320/‑69) nohQ/ynfO pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage
* ? NC_000913 951207 =135 (1.990)5 (0.080) 5/250 NT 3.8% intergenic (‑127/+65) pflA/pflB pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase/formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1
?NC_000913 951233 = 125 (1.930)intergenic (‑153/+39) pflA/pflB pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase/formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1
* ? NC_000913 = 871513120 (1.770)4 (0.060) 4/250 NT 3.5% coding (547/921 nt) gsiC glutathione ABC transporter permease
?NC_000913 = 871541 107 (1.650)coding (575/921 nt) gsiC glutathione ABC transporter permease
* ? NC_000913 = 8170043473 (51.240)17 (0.260) 10/248 NT 0.51% intergenic (‑357/‑40) ybhK/moaA putative CofD superfamily transferase/molybdopterin biosynthesis protein A
?NC_000913 = 817014 3382 (52.710)intergenic (‑367/‑30) ybhK/moaA putative CofD superfamily transferase/molybdopterin biosynthesis protein A
* ? NC_000913 = 8159773019 (44.540)9 (0.140) 7/250 NT 0.30% coding (671/909 nt) ybhK putative CofD superfamily transferase
?NC_000913 = 816006 3196 (49.420)coding (642/909 nt) ybhK putative CofD superfamily transferase
* ? NC_000913 = 8149782567 (37.870)3 (0.050) 3/246 NT 0.12% coding (1453/2022 nt) uvrB exision nuclease of nucleotide excision repair, DNA damage recognition component
?NC_000913 = 815012 2463 (38.700)coding (1487/2022 nt) uvrB exision nuclease of nucleotide excision repair, DNA damage recognition component
* ? NC_000913 814971 =2599 (38.340)4 (0.060) 3/246 NT 0.16% coding (1446/2022 nt) uvrB exision nuclease of nucleotide excision repair, DNA damage recognition component
?NC_000913 815021 = 2463 (38.700)coding (1496/2022 nt) uvrB exision nuclease of nucleotide excision repair, DNA damage recognition component