breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 71,772 T→A 6.8% I141N (ATT→AAT)  yabI → DedA family inner membrane protein
MC JC 257,908 Δ776 bp 100% [crl] [crl]
RA 262,978 A→T 6.1% intergenic (+32/+172) thrW → / ← ykfN tRNA‑Thr/pseudogene, YdiA family
RA 308,001 Δ1 bp 7.5% coding (1332/2526 nt) ecpC ← ECP production outer membrane protein
RA 361,672 C→G 5.1% W63C (TGG→TGC lacA ← thiogalactoside acetyltransferase
JC JC 458,790 IS186 (–) +6 bp :: Δ1 bp 52.1% intergenic (+90/‑93) clpX → / → lon ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
JC JC 458,790 IS186 (+) +6 bp :: Δ1 bp 38.4% intergenic (+90/‑93) clpX → / → lon ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
JC JC 564,107 IS2 (+) +5 bp 100% coding (370‑374/633 nt) sfmZ ← response regulator family protein
RA 566,396 T→A 92.4% pseudogene (21/312 nt) peaD → pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related
RA 566,414 A→G 94.6% pseudogene (39/312 nt) peaD → pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related
RA 566,435 G→A 100% pseudogene (60/312 nt) peaD → pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related
RA 566,444 T→C 100% pseudogene (69/312 nt) peaD → pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related
RA 566,451 T→C 100% pseudogene (76/312 nt) peaD → pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related
RA 566,463 T→C 100% pseudogene (88/312 nt) peaD → pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related
RA 566,468 C→T 100% pseudogene (93/312 nt) peaD → pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related
RA 566,492 2 bp→TA 100% pseudogene (117‑118/312 nt) peaD → pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related
RA 566,498 C→T 100% pseudogene (123/312 nt) peaD → pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related
RA 566,510 G→C 100% pseudogene (135/312 nt) peaD → pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related
RA 566,513 C→T 100% pseudogene (138/312 nt) peaD → pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related
RA 566,519 T→C 100% pseudogene (144/312 nt) peaD → pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related
RA 566,522 C→A 100% pseudogene (147/312 nt) peaD → pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related
RA 566,528 A→G 100% pseudogene (153/312 nt) peaD → pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related
RA 566,531 3 bp→TGT 100% pseudogene (156‑158/312 nt) peaD → pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related
RA 566,535 2 bp→CA 100% pseudogene (160‑161/312 nt) peaD → pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related
RA 566,543 A→T 100% pseudogene (168/312 nt) peaD → pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related
RA 566,547 C→A 100% pseudogene (172/312 nt) peaD → pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related
RA 566,565 A→G 100% pseudogene (190/312 nt) peaD → pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related
RA 566,570 A→C 100% pseudogene (195/312 nt) peaD → pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related
RA 566,597 T→C 100% pseudogene (222/312 nt) peaD → pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related
RA 566,651 T→C 100% pseudogene (276/312 nt) peaD → pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related
RA 566,728 G→T 100% pseudogene (45/93 nt) renD → pseudogene, DLP12 prophage;Phage or Prophage Related
RA 566,740 A→G 100% pseudogene (57/93 nt) renD → pseudogene, DLP12 prophage;Phage or Prophage Related
RA 566,742 A→C 100% pseudogene (59/93 nt) renD → pseudogene, DLP12 prophage;Phage or Prophage Related
RA 566,756 G→C 100% pseudogene (73/93 nt) renD → pseudogene, DLP12 prophage;Phage or Prophage Related
RA 566,770 C→A 100% pseudogene (87/93 nt) renD → pseudogene, DLP12 prophage;Phage or Prophage Related
RA 568,052 T→C 100% pseudogene (18/213 nt) renD → pseudogene, DLP12 prophage;Phage or Prophage Related
RA 568,067 G→A 94.3% pseudogene (33/213 nt) renD → pseudogene, DLP12 prophage;Phage or Prophage Related
RA 568,076 A→T 91.9% pseudogene (42/213 nt) renD → pseudogene, DLP12 prophage;Phage or Prophage Related
RA 568,077 A→C 91.9% pseudogene (43/213 nt) renD → pseudogene, DLP12 prophage;Phage or Prophage Related
RA 568,079 C→T 91.2% pseudogene (45/213 nt) renD → pseudogene, DLP12 prophage;Phage or Prophage Related
RA 568,085 C→T 88.3% pseudogene (51/213 nt) renD → pseudogene, DLP12 prophage;Phage or Prophage Related
RA 568,086 G→A 88.5% pseudogene (52/213 nt) renD → pseudogene, DLP12 prophage;Phage or Prophage Related
RA 568,088 T→C 88.6% pseudogene (54/213 nt) renD → pseudogene, DLP12 prophage;Phage or Prophage Related
RA 568,091 T→A 88.5% pseudogene (57/213 nt) renD → pseudogene, DLP12 prophage;Phage or Prophage Related
RA 568,124 C→T 76.2% pseudogene (90/213 nt) renD → pseudogene, DLP12 prophage;Phage or Prophage Related
RA 568,133 A→G 71.7% pseudogene (99/213 nt) renD → pseudogene, DLP12 prophage;Phage or Prophage Related
RA 568,140 T→C 70.4% pseudogene (106/213 nt) renD → pseudogene, DLP12 prophage;Phage or Prophage Related
RA 568,152 G→A 47.4% pseudogene (118/213 nt) renD → pseudogene, DLP12 prophage;Phage or Prophage Related
RA 568,163 T→C 31.0% pseudogene (129/213 nt) renD → pseudogene, DLP12 prophage;Phage or Prophage Related
RA 578,118 A→C 37.8% V4V (GTA→GTC rzpD → DLP12 prophage; putative murein endopeptidase
RA 578,130 A→C 40.2% I8I (ATA→ATC rzpD → DLP12 prophage; putative murein endopeptidase
RA 578,140 A→G 38.5% I12V (ATT→GTT)  rzpD → DLP12 prophage; putative murein endopeptidase
RA 578,158 A→T 44.8% S18C (AGC→TGC)  rzpD → DLP12 prophage; putative murein endopeptidase
RA 578,172 G→T 42.2% A22A (GCG→GCT rzpD → DLP12 prophage; putative murein endopeptidase
RA 578,175 C→T 42.2% V23V (GTC→GTT rzpD → DLP12 prophage; putative murein endopeptidase
RA 578,196 A→C 39.4% A30A (GCA→GCC rzpD → DLP12 prophage; putative murein endopeptidase
RA 578,199 C→T 42.1% I31I (ATC→ATT rzpD → DLP12 prophage; putative murein endopeptidase
RA 578,200 G→A 42.6% A32T (GCC→ACC)  rzpD → DLP12 prophage; putative murein endopeptidase
RA 578,210 T→C 91.4% V35A (GTC→GCC)  rzpD → DLP12 prophage; putative murein endopeptidase
RA 578,244 A→G 91.8% L46L (CTA→CTG rzpD → DLP12 prophage; putative murein endopeptidase
RA 578,331 G→T 100% A75A (GCG→GCT
R2L (CGA→CTA) 
rzpD →
rzoD →
DLP12 prophage; putative murein endopeptidase
DLP12 prophage; putative lipoprotein
RA 578,427 G→C 100% T107T (ACG→ACC
R34P (CGG→CCG) 
rzpD →
rzoD →
DLP12 prophage; putative murein endopeptidase
DLP12 prophage; putative lipoprotein
RA 578,809 T→C 100% T29A (ACA→GCA)  borD ← DLP12 prophage; putative lipoprotein
RA 578,811 T→G 100% Q28P (CAG→CCG)  borD ← DLP12 prophage; putative lipoprotein
RA 578,831 T→C 100% T21T (ACA→ACG borD ← DLP12 prophage; putative lipoprotein
RA 579,004 C→T 100% intergenic (‑111/+180) borD ← / ← ybcV DLP12 prophage; putative lipoprotein/DLP12 prophage; uncharacterized protein
RA 579,095 Δ1 bp 100% intergenic (‑202/+89) borD ← / ← ybcV DLP12 prophage; putative lipoprotein/DLP12 prophage; uncharacterized protein
RA 579,127 T→C 100% intergenic (‑234/+57) borD ← / ← ybcV DLP12 prophage; putative lipoprotein/DLP12 prophage; uncharacterized protein
RA 579,134 T→C 100% intergenic (‑241/+50) borD ← / ← ybcV DLP12 prophage; putative lipoprotein/DLP12 prophage; uncharacterized protein
RA 579,146 A→G 100% intergenic (‑253/+38) borD ← / ← ybcV DLP12 prophage; putative lipoprotein/DLP12 prophage; uncharacterized protein
RA 579,271 G→A 100% H108H (CAC→CAT ybcV ← DLP12 prophage; uncharacterized protein
RA 579,285 T→C 100% I104V (ATT→GTT)  ybcV ← DLP12 prophage; uncharacterized protein
RA 579,385 A→G 100% N70N (AAT→AAC ybcV ← DLP12 prophage; uncharacterized protein
RA 579,457 A→G 100% I46I (ATT→ATC ybcV ← DLP12 prophage; uncharacterized protein
RA 579,502 A→G 100% N31N (AAT→AAC ybcV ← DLP12 prophage; uncharacterized protein
RA 579,540 T→C 100% N19D (AAC→GAC)  ybcV ← DLP12 prophage; uncharacterized protein
RA 579,651 C→T 100% intergenic (‑57/‑229) ybcV ← / → ybcW DLP12 prophage; uncharacterized protein/DLP12 prophage; uncharacterized protein
RA 579,671 T→C 100% intergenic (‑77/‑209) ybcV ← / → ybcW DLP12 prophage; uncharacterized protein/DLP12 prophage; uncharacterized protein
RA 579,717 A→C 100% intergenic (‑123/‑163) ybcV ← / → ybcW DLP12 prophage; uncharacterized protein/DLP12 prophage; uncharacterized protein
RA 579,811 C→T 100% intergenic (‑217/‑69) ybcV ← / → ybcW DLP12 prophage; uncharacterized protein/DLP12 prophage; uncharacterized protein
RA 580,020 G→A 100% R47R (AGG→AGA ybcW → DLP12 prophage; uncharacterized protein
RA 580,115 C→T 100% intergenic (+29/+136) ybcW → / ← ylcI DLP12 prophage; uncharacterized protein/DUF3950 family protein, DLP12 prophage
RA 580,119 2 bp→GT 100% intergenic (+33/+131) ybcW → / ← ylcI DLP12 prophage; uncharacterized protein/DUF3950 family protein, DLP12 prophage
RA 580,302 C→T 100% R48R (AGG→AGA ylcI ← DUF3950 family protein, DLP12 prophage
RA 580,437 A→C 72.5% T3T (ACT→ACG ylcI ← DUF3950 family protein, DLP12 prophage
RA 580,697 T→C 94.4% intergenic (‑252/‑137) ylcI ← / → nohD DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein
RA 580,717 G→A 100% intergenic (‑272/‑117) ylcI ← / → nohD DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein
RA 580,729 A→T 100% intergenic (‑284/‑105) ylcI ← / → nohD DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein
RA 580,746 C→T 100% intergenic (‑301/‑88) ylcI ← / → nohD DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein
RA 580,830 2 bp→AA 100% intergenic (‑385/‑3) ylcI ← / → nohD DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein
RA 581,042 T→G 100% L70R (CTG→CGG)  nohD → DLP12 prophage; DNA packaging protein
RA 581,056 A→G 100% T75A (ACA→GCA)  nohD → DLP12 prophage; DNA packaging protein
RA 581,073 G→A 100% G80G (GGG→GGA nohD → DLP12 prophage; DNA packaging protein
RA 581,133 A→G 43.9% K100K (AAA→AAG nohD → DLP12 prophage; DNA packaging protein
RA 581,227 A→C 100% I132L (ATC→CTC)  nohD → DLP12 prophage; DNA packaging protein
RA 613,699 A→T 8.3% L321F (TTA→TTT fes → enterobactin/ferrienterobactin esterase
RA 637,583 T→A 5.9% L12F (TTA→TTT ybdO ← putative DNA‑binding transcriptional regulator
RA 657,533 A→T 5.5% intergenic (+32/+22) cspE → / ← flc constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein
RA 675,700 G→C 7.4% A283G (GCC→GGC)  ybeQ ← Sel1 family TPR‑like repeat protein
RA 755,646 C→A 38.2% Y29* (TAC→TAA sdhD → succinate dehydrogenase, membrane subunit, binds cytochrome b556
JC 756,291 Δ11 bp 36.9% coding (385‑395/1767 nt) sdhA → succinate dehydrogenase, flavoprotein subunit
RA 778,021 G→C 7.7% L94L (CTG→CTC tolB → periplasmic protein
RA 816,956 C→A 100% intergenic (‑309/‑88) ybhK ← / → moaA putative CofD superfamily transferase/molybdopterin biosynthesis protein A
RA 838,901 T→G 5.1% S103R (AGC→CGC)  ybiX ← Fe(II)‑dependent oxygenase superfamily protein
RA 838,902 G→C 5.1% R102R (CGC→CGG ybiX ← Fe(II)‑dependent oxygenase superfamily protein
RA 838,908 T→G 5.4% A100A (GCA→GCC) ‡ ybiX ← Fe(II)‑dependent oxygenase superfamily protein
RA 838,909 G→C 5.7% A100G (GCA→GGA) ‡ ybiX ← Fe(II)‑dependent oxygenase superfamily protein
RA 838,910 C→A 5.7% A100S (GCA→TCA) ‡ ybiX ← Fe(II)‑dependent oxygenase superfamily protein
RA 1,334,440 A→T 7.0% T196S (ACA→TCA)  cysB → N‑acetylserine‑responsive cysteine regulon transcriptional activator; autorepressor
RA 1,423,225 G→A 91.8% pseudogene (25/444 nt) rzpR → pseudogene, Rac prophage; Bacteriophage Rz lysis protein family;Phage or Prophage Related; putative Rac prophage endopeptidase; completely contained in another CDS
RA 1,423,244 G→C 100% pseudogene (44/444 nt) rzpR → pseudogene, Rac prophage; Bacteriophage Rz lysis protein family;Phage or Prophage Related; putative Rac prophage endopeptidase; completely contained in another CDS
RA 1,423,272 2 bp→TA 100% pseudogene (72‑73/444 nt) rzpR → pseudogene, Rac prophage; Bacteriophage Rz lysis protein family;Phage or Prophage Related; putative Rac prophage endopeptidase; completely contained in another CDS
RA 1,423,283 2 bp→CC 100% pseudogene (83‑84/444 nt) rzpR → pseudogene, Rac prophage; Bacteriophage Rz lysis protein family;Phage or Prophage Related; putative Rac prophage endopeptidase; completely contained in another CDS
RA 1,423,338 G→C 94.8% pseudogene (138/444 nt) rzpR → pseudogene, Rac prophage; Bacteriophage Rz lysis protein family;Phage or Prophage Related; putative Rac prophage endopeptidase; completely contained in another CDS
RA 1,423,404 G→T 100% pseudogene (204/444 nt)
R2L (CGA→CTA) 
rzpR →
rzoR →
pseudogene, Rac prophage; Bacteriophage Rz lysis protein family;Phage or Prophage Related; putative Rac prophage endopeptidase; completely contained in another CDS
Rac prophage; putative lipoprotein
RA 1,428,925 C→T 89.3% pseudogene (130/189 nt) lomR → pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion
RA 1,428,945 C→T 92.6% pseudogene (150/189 nt) lomR → pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion
RA 1,428,954 T→A 94.0% pseudogene (159/189 nt) lomR → pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion
RA 1,428,963 G→T 100% pseudogene (168/189 nt) lomR → pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion
RA 1,428,966 T→G 100% pseudogene (171/189 nt) lomR → pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion
RA 1,428,978 G→A 100% pseudogene (183/189 nt) lomR → pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion
RA 1,429,021 2 bp→AA 100% intergenic (+37/‑27) lomR → / → stfR pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein
RA 1,429,024 A→C 100% intergenic (+40/‑25) lomR → / → stfR pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein
RA 1,429,027 C→T 100% intergenic (+43/‑22) lomR → / → stfR pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein
RA 1,429,069 T→A 100% G7G (GGT→GGA stfR → Rac prophage; putative tail fiber protein
RA 1,429,072 A→C 100% V8V (GTA→GTC stfR → Rac prophage; putative tail fiber protein
RA 1,429,111 A→C 100% T21T (ACA→ACC stfR → Rac prophage; putative tail fiber protein
RA 1,429,114 C→T 100% I22I (ATC→ATT stfR → Rac prophage; putative tail fiber protein
RA 1,429,126 A→C 100% A26A (GCA→GCC stfR → Rac prophage; putative tail fiber protein
RA 1,429,128 A→G 100% K27R (AAA→AGA)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,160 C→G 100% L38V (CTG→GTG)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,164 C→G 100% A39G (GCC→GGC)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,171 A→G 100% E41E (GAA→GAG stfR → Rac prophage; putative tail fiber protein
RA 1,429,204 C→T 100% D52D (GAC→GAT stfR → Rac prophage; putative tail fiber protein
RA 1,429,207 T→G 100% V53V (GTT→GTG stfR → Rac prophage; putative tail fiber protein
RA 1,429,225 C→T 100% S59S (AGC→AGT stfR → Rac prophage; putative tail fiber protein
RA 1,429,228 T→C 100% V60V (GTT→GTC stfR → Rac prophage; putative tail fiber protein
RA 1,429,231 T→C 100% I61I (ATT→ATC stfR → Rac prophage; putative tail fiber protein
RA 1,429,235 2 bp→CA 100% coding (187‑188/3363 nt) stfR → Rac prophage; putative tail fiber protein
RA 1,429,240 G→T 100% V64V (GTG→GTT stfR → Rac prophage; putative tail fiber protein
RA 1,429,243 A→C 100% E65D (GAA→GAC stfR → Rac prophage; putative tail fiber protein
RA 1,429,246 A→T 100% G66G (GGA→GGT stfR → Rac prophage; putative tail fiber protein
RA 1,429,249 C→T 100% F67F (TTC→TTT stfR → Rac prophage; putative tail fiber protein
RA 1,429,252 G→A 100% P68P (CCG→CCA stfR → Rac prophage; putative tail fiber protein
RA 1,429,255 G→A 100% P69P (CCG→CCA stfR → Rac prophage; putative tail fiber protein
RA 1,429,258 A→G 100% S70S (TCA→TCG stfR → Rac prophage; putative tail fiber protein
RA 1,429,261 T→C 100% H71H (CAT→CAC stfR → Rac prophage; putative tail fiber protein
RA 1,429,273 T→C 100% I75I (ATT→ATC stfR → Rac prophage; putative tail fiber protein
RA 1,429,291 T→A 100% S81S (TCT→TCA stfR → Rac prophage; putative tail fiber protein
RA 1,429,297 C→G 100% P83P (CCC→CCG stfR → Rac prophage; putative tail fiber protein
RA 1,429,300 T→G 100% G84G (GGT→GGG stfR → Rac prophage; putative tail fiber protein
RA 1,429,319 G→T 100% G91C (GGT→TGT)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,345 T→G 100% R99R (CGT→CGG stfR → Rac prophage; putative tail fiber protein
RA 1,429,353 2 bp→TG 100% coding (305‑306/3363 nt) stfR → Rac prophage; putative tail fiber protein
RA 1,429,360 C→T 100% R104R (CGC→CGT stfR → Rac prophage; putative tail fiber protein
RA 1,429,364 T→C 100% F106L (TTT→CTT)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,404 C→T 100% A119V (GCG→GTG)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,416 2 bp→GT 100% coding (368‑369/3363 nt) stfR → Rac prophage; putative tail fiber protein
RA 1,429,425 C→A 94.1% A126D (GCC→GAC)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,435 G→A 94.2% K129K (AAG→AAA stfR → Rac prophage; putative tail fiber protein
RA 1,429,442 A→G 93.3% S132G (AGT→GGT) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,429,444 T→C 93.7% S132S (AGT→AGC) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,429,453 C→T 91.8% S135S (AGC→AGT stfR → Rac prophage; putative tail fiber protein
RA 1,429,454 A→G 91.1% T136A (ACA→GCA)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,462 C→T 89.3% A138A (GCC→GCT stfR → Rac prophage; putative tail fiber protein
RA 1,429,463 C→G 89.3% R139G (CGT→GGT) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,429,464 G→C 89.1% R139P (CGT→CCT) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,429,466 G→C 88.8% E140Q (GAG→CAG)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,470 C→T 89.5% A141V (GCG→GTG) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,429,471 G→C 89.9% A141A (GCG→GCC) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,429,474 A→G 89.1% A142A (GCA→GCG stfR → Rac prophage; putative tail fiber protein
RA 1,429,475 A→G 88.8% T143A (ACC→GCC)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,479 A→T 89.0% H144L (CAT→CTT)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,482 C→T 88.4% A145V (GCG→GTG)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,484 G→A 88.6% A146T (GCT→ACT)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,492 T→A 88.8% A148A (GCT→GCA stfR → Rac prophage; putative tail fiber protein
RA 1,429,493 G→A 88.9% A149T (GCG→ACG) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,429,495 G→T 88.7% A149A (GCG→GCT) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,429,510 A→C 83.8% A154A (GCA→GCC stfR → Rac prophage; putative tail fiber protein
RA 1,429,522 A→C 86.4% S158S (TCA→TCC stfR → Rac prophage; putative tail fiber protein
RA 1,429,534 C→T 89.3% A162A (GCC→GCT stfR → Rac prophage; putative tail fiber protein
RA 1,429,537 G→A 89.7% A163A (GCG→GCA stfR → Rac prophage; putative tail fiber protein
RA 1,429,543 G→A 89.5% S165S (TCG→TCA stfR → Rac prophage; putative tail fiber protein
RA 1,429,550 T→G 93.3% S168A (TCA→GCA) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,429,551 C→A 93.3% S168* (TCA→TAA) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,429,558 T→C 94.2% S170S (TCT→TCC stfR → Rac prophage; putative tail fiber protein
RA 1,429,562 A→G 94.8% S172G (AGC→GGC)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,569 G→A 100% G174E (GGA→GAA)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,571 A→G 100% T175A (ACG→GCG)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,580 A→G 100% T178A (ACA→GCA)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,597 3 bp→GGA 100% coding (549‑551/3363 nt) stfR → Rac prophage; putative tail fiber protein
RA 1,429,609 T→C 100% A187A (GCT→GCC stfR → Rac prophage; putative tail fiber protein
RA 1,429,612 C→A 100% A188A (GCC→GCA stfR → Rac prophage; putative tail fiber protein
RA 1,429,615 T→C 100% A189A (GCT→GCC stfR → Rac prophage; putative tail fiber protein
RA 1,429,632 G→A 100% S195N (AGC→AAC)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,682 T→G 100% S212A (TCA→GCA)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,692 T→A 100% L215Q (CTA→CAA)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,702 A→C 100% A218A (GCA→GCC stfR → Rac prophage; putative tail fiber protein
RA 1,429,708 A→G 100% T220T (ACA→ACG stfR → Rac prophage; putative tail fiber protein
RA 1,429,714 A→C 100% A222A (GCA→GCC stfR → Rac prophage; putative tail fiber protein
RA 1,429,724 A→G 100% T226A (ACC→GCC)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,732 G→A 100% K228K (AAG→AAA stfR → Rac prophage; putative tail fiber protein
RA 1,429,735 A→G 100% A229A (GCA→GCG stfR → Rac prophage; putative tail fiber protein
RA 1,429,741 A→G 100% E231E (GAA→GAG stfR → Rac prophage; putative tail fiber protein
RA 1,429,744 T→C 100% A232A (GCT→GCC stfR → Rac prophage; putative tail fiber protein
RA 1,429,747 G→C 100% A233A (GCG→GCC stfR → Rac prophage; putative tail fiber protein
RA 1,429,750 C→T 100% T234T (ACC→ACT stfR → Rac prophage; putative tail fiber protein
RA 1,429,753 G→A 100% S235S (TCG→TCA stfR → Rac prophage; putative tail fiber protein
RA 1,429,756 C→A 100% A236A (GCC→GCA stfR → Rac prophage; putative tail fiber protein
RA 1,429,759 G→A 100% R237R (CGG→CGA stfR → Rac prophage; putative tail fiber protein
RA 1,429,767 C→T 100% A240V (GCG→GTG)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,780 A→G 100% E244E (GAA→GAG stfR → Rac prophage; putative tail fiber protein
RA 1,429,783 G→A 100% A245A (GCG→GCA stfR → Rac prophage; putative tail fiber protein
RA 1,429,816 C→T 100% S256S (AGC→AGT stfR → Rac prophage; putative tail fiber protein
RA 1,429,820 A→G 100% S258G (AGT→GGT)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,823 A→C 100% S259R (AGT→CGT)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,851 G→A 100% G268E (GGA→GAA)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,858 C→T 100% S270S (TCC→TCT stfR → Rac prophage; putative tail fiber protein
RA 1,429,861 G→C 100% A271A (GCG→GCC stfR → Rac prophage; putative tail fiber protein
RA 1,429,863 A→G 100% K272R (AAG→AGG)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,888 C→T 100% N280N (AAC→AAT stfR → Rac prophage; putative tail fiber protein
RA 1,429,897 T→A 100% S283S (TCT→TCA stfR → Rac prophage; putative tail fiber protein
RA 1,429,906 G→A 100% T286T (ACG→ACA stfR → Rac prophage; putative tail fiber protein
RA 1,429,914 G→A 100% G289E (GGA→GAA)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,917 A→G 100% Q290R (CAG→CGG)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,927 G→T 94.5% S293S (TCG→TCT stfR → Rac prophage; putative tail fiber protein
RA 1,429,930 T→C 94.3% A294A (GCT→GCC stfR → Rac prophage; putative tail fiber protein
RA 1,429,938 G→A 93.0% G297D (GGC→GAC)  stfR → Rac prophage; putative tail fiber protein
RA 1,429,940 T→G 93.3% S298A (TCA→GCA)  stfR → Rac prophage; putative tail fiber protein
RA 1,430,314 T→G 77.9% A422A (GCT→GCG stfR → Rac prophage; putative tail fiber protein
RA 1,430,317 C→A 78.8% G423G (GGC→GGA stfR → Rac prophage; putative tail fiber protein
RA 1,430,324 A→G 79.1% T426A (ACG→GCG) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,430,325 C→T 79.2% T426M (ACG→ATG) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,430,326 G→A 78.9% T426T (ACG→ACA) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,430,327 G→T 79.1% A427S (GCG→TCG) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,430,329 G→A 79.5% A427A (GCG→GCA) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,430,333 G→T 79.7% A429S (GCT→TCT) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,430,335 T→G 79.8% A429A (GCT→GCG) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,430,348 A→G 78.5% T434A (ACG→GCG)  stfR → Rac prophage; putative tail fiber protein
RA 1,430,353 G→A 79.5% A435A (GCG→GCA stfR → Rac prophage; putative tail fiber protein
RA 1,430,357 T→G 78.9% S437A (TCC→GCC) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,430,359 C→G 79.6% S437S (TCC→TCG) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,430,367 C→T 79.7% T440M (ACG→ATG) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,430,368 G→A 79.2% T440T (ACG→ACA) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,430,371 C→T 79.3% R441R (CGC→CGT stfR → Rac prophage; putative tail fiber protein
RA 1,430,374 C→A 78.7% A442A (GCC→GCA stfR → Rac prophage; putative tail fiber protein
RA 1,430,377 G→A 79.0% E443E (GAG→GAA stfR → Rac prophage; putative tail fiber protein
RA 1,430,379 C→A 79.7% T444K (ACA→AAA) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,430,380 A→T 79.1% T444T (ACA→ACT) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,430,381 G→T 79.8% A445S (GCA→TCA) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,430,383 A→G 79.7% A445A (GCA→GCG) ‡ stfR → Rac prophage; putative tail fiber protein
RA 1,430,386 T→A 79.1% A446A (GCT→GCA stfR → Rac prophage; putative tail fiber protein
RA 1,430,392 G→T 79.4% R448R (CGG→CGT stfR → Rac prophage; putative tail fiber protein
RA 1,430,398 G→A 82.2% E450E (GAG→GAA stfR → Rac prophage; putative tail fiber protein
RA 1,430,404 T→A 84.3% I452I (ATT→ATA stfR → Rac prophage; putative tail fiber protein
RA 1,430,407 A→T 83.5% A453A (GCA→GCT stfR → Rac prophage; putative tail fiber protein
RA 1,430,410 C→A 83.2% S454S (TCC→TCA stfR → Rac prophage; putative tail fiber protein
RA 1,430,413 C→T 83.1% A455A (GCC→GCT stfR → Rac prophage; putative tail fiber protein
RA 1,430,416 G→C 81.8% V456V (GTG→GTC stfR → Rac prophage; putative tail fiber protein
RA 1,497,184 T→A 6.7% M110K (ATG→AAG)  opgD → OPG biosynthetic periplasmic protein
RA 1,521,054 A→T 6.2% V671D (GTC→GAC)  yncD ← putative iron outer membrane transporter
RA 1,552,263 G→T 10.8% intergenic (+272/+135) fdnI → / ← yddM formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator
RA 1,552,264 A→C 10.9% intergenic (+273/+134) fdnI → / ← yddM formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator
RA 1,552,270 T→G 11.0% intergenic (+279/+128) fdnI → / ← yddM formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator
RA 1,552,271 T→C 10.6% intergenic (+280/+127) fdnI → / ← yddM formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator
RA 1,596,873 T→A 6.8% pseudogene (1115/3861 nt) yneO ← pseudogene, AidA homolog
RA 1,635,974 T→G 100% pseudogene (394/528 nt) nohQ ← pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin
RA 1,636,068 T→C 100% pseudogene (300/528 nt) nohQ ← pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin
RA 1,636,074 C→T 100% pseudogene (294/528 nt) nohQ ← pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin
RA 1,636,128 C→T 100% pseudogene (240/528 nt) nohQ ← pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin
RA 1,636,145 T→C 100% pseudogene (223/528 nt) nohQ ← pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin
RA 1,636,173 T→C 100% pseudogene (195/528 nt) nohQ ← pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin
RA 1,636,382 C→A 100% intergenic (‑15/‑374) nohQ ← / → ynfO pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage
RA 1,636,413 C→A 43.0% intergenic (‑46/‑343) nohQ ← / → ynfO pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage
RA 1,636,423 T→C 48.4% intergenic (‑56/‑333) nohQ ← / → ynfO pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage
RA 1,636,455 G→A 90.4% intergenic (‑88/‑301) nohQ ← / → ynfO pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage
RA 1,636,484 C→T 93.0% intergenic (‑117/‑272) nohQ ← / → ynfO pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage
RA 1,636,503 T→C 93.9% intergenic (‑136/‑253) nohQ ← / → ynfO pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage
RA 1,636,893 C→T 75.1% R46R (CGC→CGT ynfO → uncharacterized protein, Qin prophage
RA 1,722,869 G→C 7.4% R250P (CGT→CCT)  ydhK → putative efflux protein (PET) component of YdhJK efflux pump
RA 1,769,928 C→G 15.4% S285R (AGC→AGG ydiK → UPF0118 family inner membrane protein
RA 1,953,914 T→A 16.6% L158Q (CTG→CAG)  cmoB → tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent
MC JC 1,978,503 Δ776 bp 100% insB1insA insB1, insA
RA 2,071,345 T→A 5.7% noncoding (29/195 nt) isrC → novel sRNA, CP4‑44; putative prophage remnant
RA 2,090,124 C→G 9.4% intergenic (+78/‑68) hisL → / → hisG his operon leader peptide/ATP phosphoribosyltransferase
RA 2,147,822 T→A 7.2% L50Q (CTG→CAG)  yegD → Hsp70 chaperone family protein
RA 2,173,361 Δ2 bp 100% pseudogene (1‑2/442 nt) gatC ← pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA 2,204,773 G→T 9.3% V60L (GTG→TTG)  yehL → putative hexameric AAA+ MoxR family ATPase
RA 2,252,804 C→A 11.8% intergenic (+16/+91) yeiI → / ← nupX putative kinase/nucleoside permease
RA 2,252,810 T→G 14.3% intergenic (+22/+85) yeiI → / ← nupX putative kinase/nucleoside permease
RA 2,252,812 A→T 14.3% intergenic (+24/+83) yeiI → / ← nupX putative kinase/nucleoside permease
RA 2,252,814 C→A 14.3% intergenic (+26/+81) yeiI → / ← nupX putative kinase/nucleoside permease
RA 2,252,820 T→G 16.2% intergenic (+32/+75) yeiI → / ← nupX putative kinase/nucleoside permease
RA 2,252,821 T→C 13.7% intergenic (+33/+74) yeiI → / ← nupX putative kinase/nucleoside permease
RA 2,484,260 T→A 7.0% F169Y (TTC→TAC)  evgA → response regulator in two‑component regulatory system with EvgS
RA 2,987,103 C→T 7.9% intergenic (+27/‑433) yqeG → / → yqeH putative transporter/putative LuxR family transcriptional regulator
RA 2,987,104 T→A 7.9% intergenic (+28/‑432) yqeG → / → yqeH putative transporter/putative LuxR family transcriptional regulator
RA 2,987,105 A→G 7.5% intergenic (+29/‑431) yqeG → / → yqeH putative transporter/putative LuxR family transcriptional regulator
RA 3,020,510 G→T 10.2% intergenic (+21/‑30) ssnA → / → ygfM putative chlorohydrolase/aminohydrolase/putative oxidoreductase
RA 3,020,511 C→G 10.5% intergenic (+22/‑29) ssnA → / → ygfM putative chlorohydrolase/aminohydrolase/putative oxidoreductase
RA 3,020,512 A→C 10.5% intergenic (+23/‑28) ssnA → / → ygfM putative chlorohydrolase/aminohydrolase/putative oxidoreductase
RA 3,037,956 A→C 9.2% W51G (TGG→GGG)  recJ ← ssDNA exonuclease, 5' ‑‑> 3'‑specific
RA 3,037,957 G→T 9.2% P50P (CCC→CCA recJ ← ssDNA exonuclease, 5' ‑‑> 3'‑specific
RA 3,058,627 G→C 5.9% intergenic (‑217/+39) serA ← / ← rpiA D‑3‑phosphoglycerate dehydrogenase/ribose 5‑phosphate isomerase, constitutive
RA 3,114,610 T→A 7.8% K1501N (AAA→AAT sslE ← putative secreted and surface‑associated lipoprotein mucinase
RA 3,377,768 C→T 10.4% intergenic (‑348/+47) sspA ← / ← rpsI stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9
RA 3,377,769 G→T 11.1% intergenic (‑349/+46) sspA ← / ← rpsI stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9
RA 3,377,770 A→C 10.4% intergenic (‑350/+45) sspA ← / ← rpsI stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9
RA 3,377,771 A→G 10.3% intergenic (‑351/+44) sspA ← / ← rpsI stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9
RA 3,439,588 G→C 6.7% intergenic (‑79/+28) yhdN ← / ← rplQ DUF1992 family protein/50S ribosomal subunit protein L17
RA 3,439,589 G→C 6.4% intergenic (‑80/+27) yhdN ← / ← rplQ DUF1992 family protein/50S ribosomal subunit protein L17
RA 3,560,455:1 +G 100% intergenic (‑2/+1) glpR ← / ← glpR pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon
RA 3,815,809 Δ1 bp 5.8% intergenic (‑41/+25) pyrE ← / ← rph orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
RA 3,815,823 C→G 8.3% intergenic (‑55/+11) pyrE ← / ← rph orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
RA 4,015,333 A→T 6.0% intergenic (+19/+21) metE → / ← ysgA 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase/putative carboxymethylenebutenolidase
RA 4,034,283 A→T 5.2% Y380F (TAT→TTT)  trkH → potassium transporter
RA 4,147,517 A→G 6.8% Y267Y (TAT→TAC yijO ← AraC family putative transcriptional activator
RA 4,182,934 C→A 41.9% P564T (CCT→ACT)  rpoB → RNA polymerase, beta subunit
RA 4,190,208 T→A 5.7% R141R (CGT→CGA yjaZ → stationary phase growth adaptation protein
RA 4,195,757 A→T 6.3% S115T (TCC→ACC)  thiC ← phosphomethylpyrimidine synthase
RA 4,262,192 C→G 6.2% S175C (TCC→TGC)  dusA → tRNA‑dihydrouridine synthase A
RA 4,296,039 T→A 5.7% intergenic (+245/+397) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,296,060 C→T 36.5% intergenic (+266/+376) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,296,380:1 +CG 100% intergenic (+586/+56) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,325,948 A→G 11.5% intergenic (‑207/+451) yjdN ← / ← yjdM metalloprotein superfamily protein/zinc‑ribbon family protein
RA 4,457,300 A→T 6.9% intergenic (+142/+14) mpl → / ← yjgA UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase/ribosome‑associated UPF0307 family protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 761506 762742 1237 16 [15] [14] 22 [sucA]–sucB [sucA],sucB
* * ÷ NC_000913 3423773–3424234 3424549–3424238 5–777 16 [15] [15] 17 [rrfD]–[rrlD] [rrfD],[rrlD]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 56677437 (0.550)1257 (18.830) 119/258 NT 97.0% pseudogene (91/93 nt) renD pseudogene, DLP12 prophage;Phage or Prophage Related
?NC_000913 568036 = 41 (0.610)pseudogene (2/213 nt) renD pseudogene, DLP12 prophage;Phage or Prophage Related
* ? NC_000913 = 78122258 (0.860)7 (0.110)
+ATGT
7/254 NT 11.1% noncoding (76/76 nt) lysY tRNA‑Lys
?NC_000913 = 781839 NA (NA)intergenic (+187/‑246) lysQ/nadA tRNA‑Lys/quinolinate synthase, subunit A
* ? NC_000913 815585 =NA (NA)23 (0.360) 17/248 NT NA noncoding (1/97 nt) RIP73 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP73 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 815610 = NA (NA)noncoding (26/97 nt) RIP73 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP73 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 1207790 =21 (0.310)41 (0.690) 33/230 NT 71.7% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 14 (0.240)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 120780522 (0.320)41 (0.690) 36/230 NT 71.1% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 14 (0.240)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 12994980 (0.000)113 (1.720) 81/254 NT 100% intergenic (+253/‑1684) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913 1300698 = 0 (0.000)intergenic (+1453/‑484) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
* ? NC_000913 = 238943854 (0.800)3 (0.050) 3/244 NT 5.2% coding (323/849 nt) yfbP TPR‑like repeats‑containing protein
?NC_000913 = 2389487 59 (0.930)coding (372/849 nt) yfbP TPR‑like repeats‑containing protein
* ? NC_000913 = 315889152 (0.770)3 (0.050) 3/248 NT 6.0% intergenic (+7/+36) yqhH/ygiQ outer membrane lipoprotein, Lpp paralog/Radical SAM superfamily protein
?NC_000913 = 3158922 45 (0.700)intergenic (+38/+5) yqhH/ygiQ outer membrane lipoprotein, Lpp paralog/Radical SAM superfamily protein
* ? NC_000913 3534486 =50 (0.740)3 (0.050) 3/240 NT 6.4% intergenic (+46/+30) pck/envZ phosphoenolpyruvate carboxykinase [ATP]/sensory histidine kinase in two‑component regulatory system with OmpR
?NC_000913 3534514 = 42 (0.680)intergenic (+74/+2) pck/envZ phosphoenolpyruvate carboxykinase [ATP]/sensory histidine kinase in two‑component regulatory system with OmpR
* ? NC_000913 3672592 =57 (0.840)4 (0.060) 4/250 NT 6.9% coding (179/900 nt) yhjC LysR family putative transcriptional regulator
?NC_000913 = 4031710 54 (0.830)coding (550/1332 nt) pepQ proline dipeptidase
* ? NC_000913 = 407896484 (1.240)5 (0.080) 4/246 NT 6.1% intergenic (+526/‑333) yiiD/yiiE GNAT family putative N‑acetyltransferase/CopG family putative transcriptional regulator
?NC_000913 = 4078978 74 (1.160)intergenic (+540/‑319) yiiD/yiiE GNAT family putative N‑acetyltransferase/CopG family putative transcriptional regulator
* ? NC_000913 4542682 =44 (0.650)17 (0.270) 14/244 NT 25.2% intergenic (+49/‑433) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 4542996 = 60 (0.950)intergenic (+363/‑119) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 = 454269045 (0.660)22 (0.350) 20/244 NT 30.2% intergenic (+57/‑425) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 = 4542986 60 (0.950)intergenic (+353/‑129) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)