New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3800403161 (1.790)4 (0.050) 4/238 NT 2.5% coding (563/699 nt) waaY lipopolysaccharide core biosynthesis protein
?NC_000913 = 3800415 152 (1.750)coding (551/699 nt) waaY lipopolysaccharide core biosynthesis protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 168 total aligned reads displayed.

GCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTAAGGCATTAATTGATTGCTGAATTTTATTTTTTAGCGCATCATCAAT  >  NC_000913/3800270‑3800560
                                                                                                                                                  |                                                                                                                                                 
gggggcttgtTTACCTTTCAAAAGGCGCATTAAATTTCTCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGa                                                                                                                                                  >  6:278251‑M2/5‑146 (MQ=255)
gcgcgcTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑cgctgcgctg                                                                                                                                                   >  1:246181/1‑146 (MQ=255)
  gcgcTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGaagc                                                                                                                                               >  8:14116‑M2/1‑144 (MQ=255)
   cgcTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCa                                                                                                                                              <  5:91111/148‑1 (MQ=255)
        gTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCtt                                                                                                                                         >  6:100804/1‑148 (MQ=255)
           tCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTTCGCTGAAGCACGCTTTc                                                                                                                                       <  2:295480/147‑1 (MQ=255)
           tCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTcc                                                                                                                                      >  8:417067/1‑148 (MQ=255)
           tCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTcc                                                                                                                                      >  4:243622/1‑148 (MQ=255)
               tttCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCg                                                                                                                                     >  2:436976/1‑145 (MQ=255)
                ttCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTCAGCGCAGCG‑TAaagcgaaagatcgtatt                                                                                                                                  <  1:72866‑M2/147‑18 (MQ=255)
                 tCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGga                                                                                                                                   >  4:406755/1‑145 (MQ=255)
                  cAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGga                                                                                                                                   >  6:271644/1‑144 (MQ=255)
                      cgccgcATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGa                                                                                                                           <  2:150487/148‑1 (MQ=255)
                          gcATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGATGAAGCACGCTTTCCGGAGAGATCGATAAt                                                                                                                       >  3:245896/1‑148 (MQ=255)
                              aaaaTTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCg                                                                                                                    >  1:130228/1‑147 (MQ=255)
                               aaaTTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGaa                                                                                                                  <  5:196654/148‑1 (MQ=255)
                                    gcgcATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTc                                                                                                              <  2:350597/147‑1 (MQ=255)
                                       cATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCa                                                                                                          >  5:406700/1‑148 (MQ=255)
                                         tttttttACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCAtt                                                                                                        >  3:173631/1‑148 (MQ=255)
                                          ttttttACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTCAGCGCAGCG‑TAaagcgaaagatcgtattg                                                                                                                                 >  3:296111‑M2/1‑104 (MQ=255)
                                           tttttACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCAtttt                                                                                                      >  3:377244/1‑148 (MQ=255)
                                           tttttACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCAttt                                                                                                       <  2:130228/147‑1 (MQ=255)
                                            ttttACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTCAGCGCAGCG‑TAaagcgaaagatcgtattgacttagagcgtcattacggtattaaaa                                                                                                      >  2:72866‑M2/1‑102 (MQ=255)
                                             tttACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCAttttt                                                                                                     <  2:121155/147‑1 (MQ=255)
                                              ttACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCAtttttt                                                                                                    <  5:182276/147‑1 (MQ=255)
                                                 cGATATACTAAAAGATAATAGCCTAGATCTCTACTCTCATTTTTAATACCGTAATGACGCGCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTtata                                                                                                 <  3:224893/147‑1 (MQ=255)
                                                 cGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTtata                                                                                                 <  5:271644/147‑1 (MQ=255)
                                                 cGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATaa                                                                                                <  3:90890/148‑1 (MQ=255)
                                                  gATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAAt                                                                                               <  7:185662/148‑1 (MQ=255)
                                                   atatACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAAt                                                                                               >  4:76381/1‑147 (MQ=255)
                                                    tataCTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGa                                                                                             <  8:336905/148‑1 (MQ=255)
                                                    tataCTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGa                                                                                             <  7:399999/148‑1 (MQ=255)
                                                    tataCTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGa                                                                                             <  7:192403/148‑1 (MQ=255)
                                                      taCTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAg                                                                                           <  7:417067/148‑1 (MQ=255)
                                                        cTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGtt                                                                                         <  4:367588/148‑1 (MQ=255)
                                                          aaaaGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATa                                                                                                                         <  6:395450/114‑1 (MQ=255)
                                                          aaaaGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATa                                                                                                                         >  5:395450/1‑114 (MQ=255)
                                                          aaaaGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTAc                                                                                       >  4:291834/1‑148 (MQ=255)
                                                           aaaGATAATAGCCTATATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACTATCTTTCGCTTTA‑CGCTGCGCTGTAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTAcg                                                                                      <  7:348725/148‑2 (MQ=255)
                                                           aaaGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTAc                                                                                       >  4:112208/1‑147 (MQ=255)
                                                            aaGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCa                                                                                     >  5:303728/1‑148 (MQ=255)
                                                              gATAATCGCCTAGATATCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATATGATCTATCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCAGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACg                                                                                   <  3:322974/148‑1 (MQ=255)
                                                              gATAATAGCCTAGATCTCTAATCTTATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACg                                                                                   <  7:309149/148‑1 (MQ=255)
                                                              gATAATAGCCTAGATCTCTAATCTTATTTTTAATACAGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACg                                                                                   <  7:309150/148‑1 (MQ=255)
                                                              gATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACTCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACg                                                                                   <  7:88574/148‑1 (MQ=255)
                                                               ataataGCCTAGATATATACTCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCTCCATTTTTtata                                                                                                 <  1:378906/133‑1 (MQ=255)
                                                                  ataGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATgg                                                                               <  2:419036/148‑1 (MQ=255)
                                                                  ataGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATgg                                                                               <  1:436976/148‑1 (MQ=255)
                                                                     gCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGAt                                                                                 >  2:36039/1‑143 (MQ=255)
                                                                     gCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGAt                                                                                 <  1:36039/143‑1 (MQ=255)
                                                                     gCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATggggg                                                                            <  1:172440/148‑1 (MQ=255)
                                                                         aGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGc                                                                        >  8:438927/1‑148 (MQ=255)
                                                                          gATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGc                                                                                                                                           <  2:161638/80‑1 (MQ=255)
                                                                              tctAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTc                                                                                                                                       <  6:86832/80‑1 (MQ=255)
                                                                               ctAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGaaa                                                                  >  2:207644/1‑148 (MQ=255)
                                                                               ctAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCAGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACAACGATGGGGGTCGCCAGaaa                                                                  >  4:6937/1‑148 (MQ=255)
                                                                                  aTCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAAcca                                                               <  7:72472/148‑1 (MQ=255)
                                                                                  aTCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAAcc                                                                <  3:337408/147‑1 (MQ=255)
                                                                                  aTCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAAcc                                                                <  3:406755/147‑1 (MQ=255)
                                                                                  aTCTCATTTTTAATACCGTAATGAAGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATATTGAAGTTACCACGATGGGGGTCGCCAGAAAcca                                                               <  8:121325/148‑1 (MQ=255)
                                                                                   tctcATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAAcca                                                               <  1:129518/147‑1 (MQ=255)
                                                                                    ctcATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGt                                                                           >  3:172563/1‑134 (MQ=255)
                                                                                    ctcATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAAccatg                                                             >  2:94957/1‑148 (MQ=255)
                                                                                     tcATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGaa                                                                                            <  1:393973/116‑1 (MQ=255)
                                                                                      cATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACAATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAAccatgc                                                            >  6:319025/1‑147 (MQ=255)
                                                                                      cATTTATAATACCTTAATGACGCTCTAAGTCAATACGAACTTTCGCTTTA‑CTATTAGCTGAACCACGCTTTACTGAGAGATAGATAATTCGAACATCACAATTTTTTATAATAAAg                                                                                           >  2:393973/1‑116 (MQ=255)
                                                                                         ttttAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAAccatgccatg                                                        >  1:151925/1‑148 (MQ=255)
                                                                                             aaTACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTg                                                     <  8:323300/147‑1 (MQ=255)
                                                                                                 ccGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTa                                                <  1:207644/148‑1 (MQ=255)
                                                                                                  cGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTaa                                               <  4:348852/148‑1 (MQ=255)
                                                                                                   gTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGa                                                                                                                   <  8:244292/79‑1 (MQ=255)
                                                                                                      aTGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATAGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAATCCATGCCATGTTGATGTAAGGCa                                           <  8:134444/148‑1 (MQ=255)
                                                                                                       tGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAAcc                                                                >  4:313404/1‑126 (MQ=255)
                                                                                                        gACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTAAGGCAt                                          >  5:421102/1‑147 (MQ=255)
                                                                                                              ctAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACGACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTAAGGCATTAattga                                   >  6:47330/1‑148 (MQ=255)
                                                                                                               tAAGTCAATACTATCTTTCGCTTTA‑CGCTGAGCTGAAGCACGCTTTACGGAGAGATCGATAATTCGAACCTCACCAttttt                                                                                                     >  2:141190/1‑81 (MQ=255)
                                                                                                               tAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATTAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTAAGGCATTAattgat                                  >  2:200596/1‑148 (MQ=255)
                                                                                                               tAAGTCAATAATATCTTTCGATTTA‑CGCTTCGCTGAAGCACGCTTTCCGTAGAGATCTATAATTCGAAACTCACCATTTTTTATAATGAATTTACCACGATTTGGGTAGACAGAAAAAATGCCATTTTGATGTAAGGCATTAattg                                    <  3:258085/146‑1 (MQ=255)
                                                                                                                aaGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGaa                                                                                                                  >  4:1283/1‑67 (MQ=255)
                                                                                                                aaGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGa                                                                                                                   >  8:350568/1‑66 (MQ=255)
                                                                                                                aaGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTta                                                                                                   >  1:346007/1‑82 (MQ=255)
                                                                                                                    cAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTAAGGCa                                           >  4:259031/1‑134 (MQ=255)
                                                                                                                     aaTACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTAAGGCATTAATTGATTGCTGa                            <  5:84762/148‑1 (MQ=255)
                                                                                                                      aTACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTAAGGCATTAATTGATTGCTGaa                           >  3:43636/1‑148 (MQ=255)
                                                                                                                        aCGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAAcc                                                                >  7:199224/1‑109 (MQ=255)
                                                                                                                        aCGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTAAGGCATTAATTGATTGCTGAatt                         >  1:443704/1‑148 (MQ=255)
                                                                                                                        aCGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTAAGGCATTAATTGATTGCTGAatt                         >  2:342016/1‑148 (MQ=255)
                                                                                                                        aCGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTAAGGCAATAATTGATTGCTGAatt                         >  7:246745/1‑148 (MQ=255)
                                                                                                                           aTCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTAAGGCATTAat                                      >  1:422087/1‑132 (MQ=255)
                                                                                                                           aTCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTAAGGCATTAat                                      <  2:422087/132‑1 (MQ=255)
                                                                                                                           aTCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTAAGGCATTAATTGATTGCTGAatttta                      >  1:322256/1‑148 (MQ=255)
                                                                                                                           aTCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTAAGGCATTAATTGATTGCTGAatttta                      >  5:220831/1‑148 (MQ=255)
                                                                                                                               ttCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAAcc                                                                                                                <  7:66659/54‑1 (MQ=255)
                                                                                                                                tCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTAAGGCATTAATTGATTGCTGAattttatt                    <  4:173631/145‑1 (MQ=255)
                                                                                                                                tCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTAAGGCATTAATTGATTGCTGAatttta                      <  3:112208/143‑1 (MQ=255)
                                                                                                                                  gCTTTA‑CGCTGCGCTGAATCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTAAGGCATTAATTGATTGCTGAATTTTATTTTTTa               <  6:145948/148‑1 (MQ=255)
                                                                                                                                  gCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTAAGGCATTAATTGATTGCTGAATTTTAtttttt                <  1:94957/147‑1 (MQ=255)
                                                                                                                                     ttA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCAATTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTAAGGAATTAATTGAATGCTGAATTTTATTTTTTAgcg            >  5:111088/1‑148 (MQ=255)
                                                                                                                                                ctgAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTAAGGCATTAATTGATTGCTGAATTTTATTTTTTAGCGCATCATCaa   >  8:267435/1‑147 (MQ=255)
                                                                                                                                                ctgAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTAAGGCATTAATTGATTGCTGAATTTTATTTTTTAGCGCATCATCAat  <  8:191222/148‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                 
GCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGATATACTAAAAGATAATAGCCTAGATCTCTAATCTCATTTTTAATACCGTAATGACGCTCTAAGTCAATACGATCTTTCGCTTTA‑CGCTGCGCTGAAGCACGCTTTCCGGAGAGATCGATAATTCGAACCTCACCATTTTTTATAATGAAGTTACCACGATGGGGGTCGCCAGAAACCATGCCATGTTGATGTAAGGCATTAATTGATTGCTGAATTTTATTTTTTAGCGCATCATCAAT  >  NC_000913/3800270‑3800560

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.