New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2729464	31 (0.750)	3 (0.080)	3/266	6.1	10.1%	intergenic (‑20/+152)	gltW/rrsG	tRNA‑Glu/16S ribosomal RNA of rrnG operon
	?	NC_000913	4168349 =	24 (0.610)					intergenic (+149/‑23)	rrsB/gltT	16S ribosomal RNA of rrnB operon/tRNA‑Glu
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGC  >  NC_000913/2729325‑2729605                                                                                                                                            |                                                                                                                                              tttGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGTAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGtt                                                                                                                                            <  1:369836/143‑1 (MQ=17) tgtGAGATATTGGGGGCGGCGACTGTCCCTCACAAGCCAGTAAGGGGCGTCCCCTAGGGGATTCGAACCCCTGTTAGCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGtt                                                                                                                                            <  2:581205/141‑1 (MQ=11)     agaTATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCCCTAGACGAACGGGACCCGAAAATTGCTTATCACGCGTTGCGt                                                                                                                                        >  1:366519/1‑143 (MQ=12)                     gattttCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAgg                                                                                                                        <  1:132026/140‑1 (MQ=1)                              tcgcaAACTAGCAAGTGGCGTCCCCTAGGGGACTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCttt                                                                                                               <  1:355662/140‑1 (MQ=0)                                                                                 cggcaacgggCGGTGGCGTGGGCCTCTAGTCGAAGGCGGCACGATACTTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCCTTAATAGAAAGCGAACGGCCTTGTTCTCTTCAGCCTCACTCCCAAcgcg                                                            <  2:757251/136‑1 (MQ=1)                                                                                           cgttgtCCTGTGCCTCTAAACAAAGGGTACACGAAAATTTCTTATTACGCGTTTCCTGATATGTTCGTGTAGGGTGACCTTTCTTTACTAGAAAGCGAACTGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCtt                                                  <  1:103280/140‑1 (MQ=1)                                                                                                  gggggCGTGTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGCGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCATTATTCTCTTCAGCCTCACTCCCAACGCGTAACCGCCGTGCTAtcc                                           >  2:133290/3‑141 (MQ=11)                                                                                                  cTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTGTCTTCAGCCTCACTCCCACCGCGTAAACGCCTCGCTATTc                                           >  1:194064/1‑143 (MQ=12)                                                                                                  cTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTc                                           >  1:740626/1‑143 (MQ=32)                                                                                                    gggCTTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCAc                                         <  2:173182/143‑1 (MQ=17)                                                                                                      gCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtt                                       <  2:610639/143‑1 (MQ=32)                                                                                                      gCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtt                                       <  2:57660/143‑1 (MQ=32)                                                                                                       ccTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACttt                                      >  1:214092/1‑143 (MQ=32)                                                                                                         tctAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTCATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc                                    >  1:309270/1‑143 (MQ=18)                                                                                                                gAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTTATCCGag                             >  2:447045/1‑142 (MQ=17)                                                                                                                gAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCCGaa                             >  1:275869/1‑142 (MQ=25)                                                                                                                gAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGAc                             >  2:144688/1‑143 (MQ=37)                                                                                                                 aaGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACCCCTTGCTATTCACTTTTCATCAGACa                            >  2:246505/1‑143 (MQ=37)                                                                                                                   ggggACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAAt                          <  1:505693/143‑1 (MQ=39)                                                                                                                       acacGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtgt                      <  1:712531/143‑1 (MQ=39)                                                                                                                         acGAAAATTTCTGATCACGCGTTGCGTGAGATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACCGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtgtgt                    <  2:154942/143‑1 (MQ=255)                                                                                                                         acGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtgtgt                    >  1:40554/1‑143 (MQ=37)                                                                                                                           gAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACACTCTGTGTGa                  >  1:729342/1‑143 (MQ=255)                                                                                                                             aaaTTGCTTATCACGCGTTGCGTGATATCTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGc                <  1:435840/143‑1 (MQ=38)                                                                                                                                    ttATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCCGTGTGAGCACTGCaa         >  2:64234/1‑143 (MQ=255)                                                                                                                                    ttATCACGCGTTGCGTGATATTTTCGTGTAGGATGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATCCACTTTTCATCAGACAATCCGTGTGAGCACTGCaa         >  1:745767/1‑143 (MQ=255)                                                                                                                                     tATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCaaa        <  2:145826/143‑1 (MQ=255)                                                                                                                                        cACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTa     <  1:42387/143‑1 (MQ=255)                                                                                                                                           gcgTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGTCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGc  <  2:49201/143‑1 (MQ=255)                                                                                                                                           gcgTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGc  <  1:144688/143‑1 (MQ=40)                                                                                                                                            |                                                                                                                                              TTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGC  >  NC_000913/2729325‑2729605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.