New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2729464	31 (0.750)	3 (0.080)	3/266	6.1	10.1%	intergenic (‑20/+152)	gltW/rrsG	tRNA‑Glu/16S ribosomal RNA of rrnG operon
	?	NC_000913	4168349 =	24 (0.610)					intergenic (+149/‑23)	rrsB/gltT	16S ribosomal RNA of rrnB operon/tRNA‑Glu
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTC  >  NC_000913/4168211‑4168488                                                                                                                                           |                                                                                                                                            gCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAcgc                                                                                                                                         >  2:16853/1‑143 (MQ=40)       tttGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATACGGCAGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAGTATCACGCACCGCGTGAtg                                                                                                                                   >  2:75704/1‑142 (MQ=255)              tGCTCACACCGATTGTCTGATAGACAGTGAAAAGCAATGCGTTGACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAAtt                                                                                                                            <  1:617581/143‑1 (MQ=255)                 tCACACAGATAGGCTGCTAAGAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTc                                                                                                                         <  1:714865/143‑1 (MQ=11)                   acacaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGCAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCCCGCAACGCGGGATAAGCAATTTTCgt                                                                                                                       >  1:562646/1‑143 (MQ=255)                   acacaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCgt                                                                                                                       >  2:294865/1‑143 (MQ=38)                   acacaGATTGTCTGATAGAAAGTGAAAAGCAACGCGTTTACGCGTTGGGAGAGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGCTAAGCAATCTTCgt                                                                                                                       >  2:398407/1‑143 (MQ=255)                               tGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATACGCACTTTGCGTGTGCCATTCGTc                                                                                                           >  2:214883/1‑143 (MQ=11)                               tGATAGAAAGTGAAAAGCAAGGCGATTACGCGTTGAGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGCAAATATCACGCAACGCGTGGTAAGCAATTTGTATGTCCCCACCGTc                                                                                                           >  1:100600/1‑143 (MQ=11)                                  tAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTag                                                                                                        >  1:195683/1‑143 (MQ=35)                                   ggAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTACTCATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTaga                                                                                                       <  2:656726/142‑1 (MQ=17)                                   aGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTaga                                                                                                       <  1:440489/143‑1 (MQ=33)                                     aaaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAgg                                                                                                     >  1:663754/1‑143 (MQ=32)                                     aaaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAgg                                                                                                     >  1:481253/1‑143 (MQ=32)                                     aaaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAgg                                                                                                     >  1:307645/1‑143 (MQ=32)                                      aaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGc                                                                                                    <  1:503142/143‑1 (MQ=32)                                      aaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGc                                                                                                    <  2:28581/143‑1 (MQ=32)                                       aGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTATAGAGGcc                                                                                                   >  1:694248/1‑143 (MQ=17)                                         tGAAAAGCAAGGCGGCTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGGCGGTCGCTTACAAAAAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGGCCCCTTCGTCTAGAGGCCCa                                                                                                 <  1:387943/143‑1 (MQ=11)                                                                             tcgcagcaTAACGCCGTTCGCTTTCCATTACTGCAAGCTCACCCTACACGTATACATCCCGCAACGCGTGATACGCAATCTTCCTGCCCGCTTCGTCTAGAGGCCCAGCACACCGCCCTTTCACGGCGGTAACAGGGGTTCGa                                                             <  2:324456/136‑1 (MQ=1)                                                                                                    tcgtttgaTGAGAGCTCACCCTACACGAAACTATCGCGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGc                                      <  2:223696/136‑1 (MQ=1)                                                                                                            tgcaaGCTCAGTCTACAGGAACACATCACGCAACGTGGGATAAGCAATTTTCGTGCCCCCTTCGTCTAGAGGCCCGGGACGTCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTtgt                              <  1:269004/140‑1 (MQ=1)                                                                                                              gaggcccACCCTAAACGAAAATATCACTCAACGCGTGATAAGCAAGTCTCGGGGCCCCTTCGTCGAGAGGCTCAGGATAGCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTgtga                            <  1:548741/137‑1 (MQ=1)                                                                                                                                  atatCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTaa        <  1:357812/143‑1 (MQ=32)                                                                                                                                     tCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCGAGGGGACGCCACTTGCTGGTTTGTGAGCGAAAGTCGGCGACCTTAatat     >  2:692303/1‑143 (MQ=12)                                                                                                                                        cGCAACCCGTGCTAAGCCTGTCTCGTGTCCTCGTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACTCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATAtctc  <  2:582836/143‑1 (MQ=11)                                                                                                                                           |                                                                                                                                            GCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTC  >  NC_000913/4168211‑4168488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.