Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503	1979278	776	76 [0]	[0] 77	insB1–insA	insB1,insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	73 (1.190)	61/268	0.0	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

GTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTAT  >  NC_000913/1979137‑1979421                                                                                                                                               |                                                                                                                                               gggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgt                                                                                                                                                >  1:996283‑M2/143‑143 (MQ=255)   gtctttacacttatctaagatttttcctaaatcgacgccactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacgctcaattacttaacataaatgtat                                                                                                                                              >  2:424505‑M2/141‑143 (MQ=255)   gtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtat                                                                                                                                              >  2:8500‑M2/141‑143 (MQ=255)     ctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                                                            <  1:74402‑M2/5‑1 (MQ=255)      tttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAg                                                                                                                                           >  1:876387‑M2/138‑143 (MQ=255)       ttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGt                                                                                                                                          >  2:332169‑M2/137‑143 (MQ=255)        tacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTc                                                                                                                                         <  1:869988‑M2/8‑1 (MQ=255)           acttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATa                                                                                                                                      >  2:668078‑M2/133‑143 (MQ=255)           acttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggagctgcgattttccataatgcgtgatgcagatcacacaaaaaactcaattacttaacataaatgTATAAGGCATa                                                                                                                                      >  2:600072‑M2/133‑143 (MQ=255)             ttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACt                                                                                                                                    >  1:325684‑M2/131‑143 (MQ=255)                tctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtttt                                                                                                                                 <  1:550659‑M2/16‑1 (MQ=255)                tctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagataacacaaaacactcaattacttaacataaatgTATAAGTCATACtttt                                                                                                                                 >  2:72495‑M2/128‑143 (MQ=255)                   aagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaaaggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttcacataaatgTATAAGGCATACttttgtt                                                                                                                              >  2:622441‑M2/125‑143 (MQ=255)                     gatttttcctaaatcgacgcaactgtactcgtcactacacgcacatcagtgggcgccgcgctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtttt                                                                                                                            <  1:856184‑M2/21‑1 (MQ=255)                     gatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtttt                                                                                                                            >  1:917611‑M2/123‑143 (MQ=255)                       tttttcctcaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                          <  1:955223‑M2/23‑1 (MQ=255)                        ttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTCGTTCtggt                                                                                                                         >  2:208277‑M2/120‑142 (MQ=255)                          ttcctaaatcgacgcaactgtactcgtcactacacgcacatccaaaggaggggggctgcgattttcaataatgggtgatgcagataagacaataatctcgattacttaacataaatgTATAAGTGATACATTGGGCTTGGgtg                                                                                                                       >  1:377967‑M2/118‑143 (MQ=255)                               aaatcgacgcaactgtactcgtcgctacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAttt                                                                                                                  <  2:294854‑M2/31‑1 (MQ=255)                               aaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAttt                                                                                                                  <  1:703090‑M2/31‑1 (MQ=255)                                       gcaactgtactcttcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGt                                                                                                          <  2:455706‑M2/39‑1 (MQ=255)                                         aactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTa                                                                                                        >  2:1050649‑M2/103‑143 (MQ=255)                                              tactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTCAAAAg                                                                                                   >  1:516726‑M2/98‑143 (MQ=255)                                                   gtcactgcacgctcctgcaacggaggggggctgcgattttcaataatgcgggatgcaggtcacacaaaacactcaattacttatcataaatgCATAAGTCATACTTTTGGTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                                                              <  2:768398‑M2/51‑1 (MQ=255)                                                   gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                                                              <  1:631749‑M2/51‑1 (MQ=255)                                                   gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                                                              <  2:71572‑M2/51‑1 (MQ=255)                                                   gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                                                              >  1:752518‑M2/93‑143 (MQ=255)                                                    tcactacacgcacatacaacggtggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacagaaatgTATAAGGCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTc                                                                                             <  1:599141‑M2/52‑1 (MQ=255)                                                     cactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcg                                                                                            >  1:449745‑M2/91‑143 (MQ=255)                                                      actacacggacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacacgcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgc                                                                                           <  2:163384‑M2/54‑1 (MQ=255)                                                       ctacaagcacatacaacggaggggggctgcgattttctataatgcgtgatgcagatcacacaagacactcaattacttaacttaaatgTATGAGCCATCCTTTGGTGTGGGGTGTATTTCAATCTGGTAAACAGCGTTTcgct                                                                                          >  2:976026‑M2/89‑143 (MQ=255)                                                        tacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTAATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgcta                                                                                         >  1:201337‑M2/88‑143 (MQ=255)                                                           acgcacatacaacggaggggggctgcgattttcaataatgcgtgctgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTCTTAAAAAGTTTATctctgcgc                                                                                      >  2:786834‑M2/85‑143 (MQ=255)                                                                 atacaacggaggggggcggcgattttcaataatgcgtgatgcagatcacacaagacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCGACGCTcgcaa                                                                                >  2:1032965‑M2/79‑143 (MQ=255)                                                                  tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCACTCTGTTAAAAAGTTTTTCGCTACGCTagccag                                                                               >  1:1039703‑M2/78‑143 (MQ=255)                                                                  tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaag                                                                               >  2:731005‑M2/78‑143 (MQ=255)                                                                   acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTAAGCTagcaggc                                                                              >  1:154333‑M2/77‑143 (MQ=255)                                                                      acggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTTGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCCagcaagcaac                                                                           >  2:586987‑M2/74‑142 (MQ=255)                                                                       cggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTCTTGTTTTGGGTGTATTTCAATCTGTTAAAGAGTTTTTCGCTACGCTGATAAGCaaaa                                                                          >  2:250327‑M2/73‑143 (MQ=255)                                                                         gaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattagttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAAt                                                                        <  2:16277‑M2/73‑1 (MQ=255)                                                                         gaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacacgcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGGTTTTCGCTACGCTAGCAAGCAAAAAt                                                                        <  1:1131413‑M2/73‑1 (MQ=255)                                                                           ggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGa                                                                      >  1:505292‑M2/69‑143 (MQ=255)                                                                            gggggctgcgatgttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaa                                                                     <  2:151499‑M2/76‑1 (MQ=255)                                                                             ggggctcctattttcaataatgcgtgatgcagatcacacaaaacactcaagtacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                                                                    <  2:957514‑M2/77‑1 (MQ=255)                                                                              gggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAc                                                                   >  1:845045‑M2/66‑143 (MQ=255)                                                                              gggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAc                                                                   >  1:580884‑M2/66‑143 (MQ=255)                                                                              gggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCCAGCAAGCAAAAATGAAAc                                                                   >  2:722256‑M2/66‑143 (MQ=255)                                                                               ggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACa                                                                  <  1:1150067‑M2/79‑1 (MQ=255)                                                                                  tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCATTCTGTTAAAAAGTTTGTCGTTAGGTTGGCAAGAAAAAATGAAAcagca                                                               >  2:923618‑M2/62‑141 (MQ=255)                                                                                  tgcgatttgcgataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGa                                                               <  2:1061341‑M2/82‑1 (MQ=255)                                                                                      attttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataa                                                           <  2:209541‑M2/86‑1 (MQ=255)                                                                                        tttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc                                                         >  1:103593‑M2/56‑143 (MQ=255)                                                                                           caataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaa                                                      >  2:1055170‑M2/53‑143 (MQ=255)                                                                                              taatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg                                                   >  2:799181‑M2/50‑143 (MQ=255)                                                                                               aatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGACATgg                                                  >  1:486452‑M2/49‑143 (MQ=255)                                                                                                 tgtgtgaggcagatcacacaaaacactcaagtacttaacataaatgTATAAGTCATACTTGTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTGGTGACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa                                                <  1:530009‑M2/97‑1 (MQ=255)                                                                                                   cgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg                                              >  1:87818‑M2/45‑143 (MQ=255)                                                                                                   cgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg                                              <  1:682177‑M2/99‑1 (MQ=255)                                                                                                        tgaagataacacaaaacacccaattacttaacataaatgTATAACTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGCATGTTgcg                                         >  1:548368‑M2/40‑143 (MQ=255)                                                                                                           agatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcac                                      >  2:96401‑M2/37‑143 (MQ=255)                                                                                                              acacacgaaacactcagttacttaacctcaatgTATAAGGCACACTTTTGGTTTGGGTGTAGTTCAATCTGTGAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGt                                   <  1:1037181‑M2/110‑1 (MQ=255)                                                                                                                  acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaa                               <  1:501174‑M2/114‑1 (MQ=255)                                                                                                                     aaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATa                            <  1:332169‑M2/117‑1 (MQ=255)                                                                                                                        cactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACt                         <  1:668078‑M2/120‑1 (MQ=255)                                                                                                                           tcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCGCCGTAAAAATAActctc                      >  1:661390‑M2/21‑141 (MQ=255)                                                                                                                           tcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAc                      >  1:324185‑M2/21‑143 (MQ=255)                                                                                                                             aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCg                    >  1:809196‑M2/19‑143 (MQ=255)                                                                                                                             aattacttaacataaatgTATAAGTCATACTTGTGTTTTGGGTGTATTTCATTCTGTTAAAAAGTTTTTCGCTAAGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAGCg                    >  2:616949‑M2/19‑143 (MQ=255)                                                                                                                              attacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGt                   <  1:722256‑M2/126‑1 (MQ=255)                                                                                                                                tacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaa                 <  1:72495‑M2/128‑1 (MQ=255)                                                                                                                                  cttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaat               >  1:1142861‑M2/14‑143 (MQ=255)                                                                                                                                     aacataaatgTAAAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAGCGAAATGGGATGTTGCGCACAGTCAAGATAACGcgccgtaccaaat            >  1:425196‑M2/11‑137 (MQ=255)                                                                                                                                      acataaatgTATAAGTCATATTTTTGTTTTGGGTGTACTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGAAAGCAAAAATGAAACAGGAATGATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatc           <  2:1143196‑M2/134‑1 (MQ=255)                                                                                                                                        ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTACAAAGTTTTTTGCTACGCTAGCAAGCAAAAATGAAACAGGTATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTGACCGTAAAGcatcat         >  2:308661‑M2/8‑143 (MQ=255)                                                                                                                                         taaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcatc        >  2:568152‑M2/7‑143 (MQ=255)                                                                                                                                          aaatgTATAAGTCATACGTTTTTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCt       <  2:1074437‑M2/138‑1 (MQ=255)                                                                                                                                               tataAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCtat  >  1:202488/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                               GTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTAT  >  NC_000913/1979137‑1979421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑