breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal new junction evidence (lowest skew 10 of 17 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3814363124 (0.950)3 (0.020) 3/478 NT 2.2% coding (432/456 nt) dut deoxyuridinetriphosphatase
?NC_000913 = 3815441 153 (1.230)coding (328/642 nt) pyrE orotate phosphoribosyltransferase
* ? NC_000913 = 3607578130 (0.990)3 (0.020) 3/486 NT 2.5% coding (1128/2199 nt) zntA zinc, cobalt and lead efflux system
?NC_000913 = 3607670 110 (0.870)coding (1220/2199 nt) zntA zinc, cobalt and lead efflux system
* ? NC_000913 = 3220246148 (1.130)5 (0.040) 5/484 NT 3.2% coding (753/1380 nt) patA putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent
?NC_000913 = 3220398 162 (1.290)coding (905/1380 nt) patA putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent
* ? NC_000913 = 2713829150 (1.150)5 (0.040) 5/482 NT 3.8% coding (934/1335 nt) srmB ATP‑dependent RNA helicase
?NC_000913 = 2713908 109 (0.870)coding (1013/1335 nt) srmB ATP‑dependent RNA helicase
* ? NC_000913 = 2414788127 (0.970)3 (0.020) 3/486 NT 2.4% coding (42/2145 nt) pta phosphate acetyltransferase
?NC_000913 2414804 = 125 (0.990)coding (58/2145 nt) pta phosphate acetyltransferase
* ? NC_000913 = 2414510161 (1.230)3 (0.020) 3/492 NT 1.8% coding (1041/1203 nt) ackA acetate kinase A and propionate kinase 2
?NC_000913 2414520 = 163 (1.270)coding (1051/1203 nt) ackA acetate kinase A and propionate kinase 2
* ? NC_000913 2268434 =144 (1.100)3 (0.020) 3/488 NT 2.3% coding (606/987 nt) yeiR Zn‑stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein
?NC_000913 2268515 = 111 (0.880)coding (687/987 nt) yeiR Zn‑stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein
* ? NC_000913 = 1590598103 (0.790)4 (0.030) 4/486 NT 3.9% intergenic (‑62/+256) yneL/hipA pseudogene, AraC family/inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase
?NC_000913 = 1590605 99 (0.780)intergenic (‑69/+249) yneL/hipA pseudogene, AraC family/inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase
* ? NC_000913 1560542 =121 (0.920)3 (0.020) 3/500 NT 2.8% coding (388/1023 nt) ddpB D,D‑dipeptide ABC transporter permease
?NC_000913 1560822 = 88 (0.680)coding (108/1023 nt) ddpB D,D‑dipeptide ABC transporter permease
* ? NC_000913 = 1427373118 (0.930)3 (0.020)
+GCA
3/484 NT 2.4% pseudogene (920/933 nt) tmpR Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein
?NC_000913 1427374 = 124 (0.950)pseudogene (921/933 nt) tmpR Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein