Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,815,859	Δ82 bp		[rph]–[rph]	[rph], [rph]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3815859	3815940	82	71 [0]	[0] 71	[rph]–[rph]	[rph],[rph]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3815858	0 (0.000)	66 (1.150)	52/264	0.1	100%	pseudogene (24/48 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
	?	NC_000913	3815941 =	0 (0.000)					pseudogene (609/669 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

AAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCC  >  NC_000913/3815804‑3816081                                                                                                                                          |                                                                                                                                             tgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTccc                                                                                                                                         <  2:637547‑M2/6‑1 (MQ=255)    ttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTg                                                                                                                                      <  1:159533‑M2/9‑1 (MQ=255)        taagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGCCCCCTGCACt                                                                                                                                  >  2:841954‑M2/131‑143 (MQ=255)         aagcggaagttcgacacactgtcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatccgtttgccagcgccgccttctgcCGTCCCCTGCACtt                                                                                                                                 <  2:596557‑M2/14‑1 (MQ=255)         aagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACtt                                                                                                                                 <  2:51732‑M2/14‑1 (MQ=255)           gcgcaaattcaataaacgggcgctgatatggtttcatgccttcgccccgcatcttacttttctacagagaaaaaagaggggactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCa                                                                                                                               <  2:674404‑M2/16‑1 (MQ=255)              caaattcaataaacttgcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatg                                                                                                                            <  2:754202‑M2/19‑1 (MQ=255)              caaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCCCTTCAatg                                                                                                                            >  2:1003593‑M2/125‑143 (MQ=255)                aattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaagccgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTcaatgct                                                                                                                          >  1:817099‑M2/123‑141 (MQ=255)                  ttcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCTCCTGCACTTCAATGATgc                                                                                                                        >  1:460498‑M2/121‑143 (MQ=255)                    caataatcttgcgctgatattgtttcatgccttcgctcctcatcttacttttctacagacacaaaaaaggcgtctcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgcgc                                                                                                                      <  2:345597‑M2/25‑1 (MQ=255)                      ataaactggcgctgagatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGccc                                                                                                                    <  1:943475‑M2/27‑1 (MQ=255)                             ggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcaactcctcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                             <  1:702239‑M2/34‑1 (MQ=255)                             ggcgctgatatggtggcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                             <  2:105714‑M2/34‑1 (MQ=255)                                        ggtttcatgccttcggtcctcgacttacgtttctagagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTAc                                                                                                  <  1:1089594‑M2/45‑1 (MQ=255)                                          tttcatgccttcgctcctcatcttacttttctacaggcaaaaaaaaggcgcctcatcagtcgccttaaaaatcagtttgccagagccgccttctgcCGTCCCCTGCACTTCAATCAGGCGCCCCTCTTCGGTCACCactaagc                                                                                                >  2:41361‑M2/97‑140 (MQ=255)                                          tttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCCCCCCTCTTCGGTCATCACTACGt                                                                                                >  1:367624‑M2/97‑143 (MQ=255)                                           ttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTCCGtt                                                                                               >  1:362469‑M2/96‑143 (MQ=255)                                            tcgggccttcgctcctcctcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc                                                                                              <  2:1068655‑M2/49‑1 (MQ=255)                                               tgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCCCTACgttcctt                                                                                           >  1:1049291‑M2/92‑140 (MQ=255)                                                      gctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttggcagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTGATGGAGGtct                                                                                    >  2:894712‑M2/85‑143 (MQ=255)                                                           tcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCg                                                                               >  1:325409‑M2/80‑143 (MQ=255)                                                                ttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgcctactgcCGTCCCCTGCACTTCAATGATACGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCcctccgaccga                                                                          >  1:34938‑M2/75‑138 (MQ=255)                                                                   ctttcctacagacaaaagagaggcgactcatcagtcgccttaaagatcagcttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTc                                                                       <  1:1009795‑M2/72‑1 (MQ=255)                                                                    ttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgacagcgccgccttctgcCGTACCCTGCACTTCAATGATGCGCACGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGACt                                                                      >  2:566360‑M2/71‑143 (MQ=255)                                                                        ctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCaa                                                                  <  2:89808‑M2/77‑1 (MQ=255)                                                                         tcccgccaaaacaaaggcgacgcaccagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                                                                 <  1:172460‑M2/78‑1 (MQ=255)                                                                         tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                                                                 <  1:660426‑M2/78‑1 (MQ=255)                                                                            agacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTa                                                              <  1:1099910‑M2/81‑1 (MQ=255)                                                                            agacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTa                                                              <  2:139057‑M2/81‑1 (MQ=255)                                                                            agacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGAAGAGCCTTCAACGTa                                                              >  2:694688‑M2/63‑143 (MQ=255)                                                                            agacaaaaaaaaggcgactcaccagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCtt                                                                     >  1:735044‑M2/63‑136 (MQ=255)                                                                            agacaaaaaaaaggcgactcaccagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCtt                                                                     <  2:735044‑M2/74‑1 (MQ=255)                                                                             gacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTAt                                                             <  2:492135‑M2/82‑1 (MQ=255)                                                                             gacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTAt                                                             <  1:556031‑M2/82‑1 (MQ=255)                                                                              acaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTAtt                                                            >  1:839381‑M2/61‑143 (MQ=255)                                                                              acaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGAGCCTGAGCTATATCGTCTCTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTAtt                                                            >  1:813847‑M2/61‑143 (MQ=255)                                                                                aaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATCCGCCCGTCTTCGGTCGTCACTCCGCTCATGGCGGTCCCTCCGCCCGAGTCACCACCGTATTcc                                                          >  2:64159‑M2/59‑143 (MQ=255)                                                                                aaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcAGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTCCGTTCATGTCGGTCTCTGCGGCCGAGTCTTCAACGTATccc                                                          >  2:555643‑M2/59‑143 (MQ=255)                                                                                 aaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGCTCCTCACTACGTTCACGTCCGTCTCTGCGCCAGCGCCTTCACCGTCCTCCa                                                         >  2:250496‑M2/58‑143 (MQ=255)                                                                                   aaaacggcgcctcctcagtcgccttaaaaatcagtttgccagcaccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGa                                                       <  1:137220‑M2/88‑1 (MQ=255)                                                                                   aaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGa                                                       <  1:1096933‑M2/88‑1 (MQ=255)                                                                                    aaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAt                                                      <  1:727619‑M2/89‑1 (MQ=255)                                                                                      aaggcgactcatcagtcgcgttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCg                                                    <  2:790653‑M2/91‑1 (MQ=255)                                                                                        ggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCCGCGGCAGAGTCGTCAACGTATTCCAGATCGCa                                                  <  2:582709‑M2/93‑1 (MQ=255)                                                                                         gcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAGGTATTGCAGATCGCaa                                                 >  1:993183‑M2/50‑143 (MQ=255)                                                                                         gcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCaa                                                 >  1:964551‑M2/50‑143 (MQ=255)                                                                                          cgactcatcagtcgccttaaaaaccagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCaaa                                                <  1:86292‑M2/95‑1 (MQ=255)                                                                                           gactcatcagtcgccttaacaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCCCTGCGGCCGAGTCTTCACCGTCTTCCAGATCCCAAAc                                               >  2:138731‑M2/48‑143 (MQ=255)                                                                                               catcagtcgccctaggaatcagtgggccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGCCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTGCAGATCGCAAACCGCt                                           <  2:293857‑M2/100‑1 (MQ=255)                                                                                                atcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCtt                                          <  2:615‑M2/101‑1 (MQ=255)                                                                                                atcagtcgcctaaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTTGGTCTCTGCGGCAGAGTATTCAAAGTATTCCAGATCGAAAACCGCtt                                          >  1:730579‑M2/43‑143 (MQ=255)                                                                                                 taagtcgccgtaaaccacagtttgcgagcgccgccttcggcCGTCCCCTGCACTCCAATGATGCGCCCGTGTTCGGTCATCATTACTTTCATGGCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCTCTTc                                         <  1:763635‑M2/102‑1 (MQ=255)                                                                                                     tctccttaaaaatcattttgccagcgcccccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTGCGGTCCTCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAAATCGCAAACCGCTTCGCCg                                     <  2:973866‑M2/106‑1 (MQ=255)                                                                                                        ccttaaaaatcagtctgcccgcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTc                                  <  2:216766‑M2/109‑1 (MQ=255)                                                                                                                atcgctttgccagctctgccttcttcCGGCCCGTGCACTTCATTGATGCGCCCGTCTTCGGTCATCGCTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTcc                          <  2:7222‑M2/117‑1 (MQ=255)                                                                                                                atcagtttgccagcgccgcctcctgcCGTCCCCTGCACTTCAACGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTcc                          <  2:803083‑M2/117‑1 (MQ=255)                                                                                                                  cagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTACAGTACGCAGTGCGTTCATGTCGGTCTCTGCGGCAGAGTCTTCGACGTATTCGAGATCGCGAAGCGCTTCGCCGTTCACGACTCcgg                        >  1:420893‑M2/25‑142 (MQ=255)                                                                                                                    gtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCCACGTATTCCAGATCGCAAACCGCTTCCCCGTACACAATTCCGACa                      >  2:628800‑M2/23‑143 (MQ=255)                                                                                                                    gtctgccggcgccgccgtccgcCGCCCCCTGCACTTCCACGACGCGCCCGCCTTCGGTCATCACTACGTACATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACa                      <  2:246813‑M2/121‑1 (MQ=255)                                                                                                                    ggttgccagcgccgccttctgcCGTCCCCGGCACTTCAAGTTTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCCGGCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACa                      <  2:178454‑M2/121‑1 (MQ=255)                                                                                                                         ccagccccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCACATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAAc                 <  1:48259‑M2/126‑1 (MQ=255)                                                                                                                          cagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGGTCACAATTCCGAcataagca                >  1:600048‑M2/17‑140 (MQ=255)                                                                                                                           agcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCCACGTATTCCAGATCGCAAACCGGTTGCCCGTTCACAATTCCGACAGCAACTg               >  2:1024956‑M2/16‑143 (MQ=255)                                                                                                                           agcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGCAACTg               >  1:1020789‑M2/16‑143 (MQ=255)                                                                                                                             cgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCg             <  1:1042972‑M2/130‑1 (MQ=255)                                                                                                                                cgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGCCAGAAACTGCGGCt          >  1:489646‑M2/11‑143 (MQ=255)                                                                                                                                    ttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCAGACAGAAACTGCTGCTaccc      >  1:1006944‑M2/7‑142 (MQ=255)                                                                                                                                      ctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCCAACATCACTACTGTCGTGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATc    >  1:472739‑M2/5‑143 (MQ=255)                                                                                                                                       tgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCGACCATcc   >  1:264652‑M2/4‑143 (MQ=255)                                                                                                                                        gcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATccc  >  1:663983‑M2/3‑143 (MQ=255)                                                                                                                                          |                                                                                                                                             AAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCC  >  NC_000913/3815804‑3816081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑