mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 13 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4034102 | 127 (0.930) | 4 (0.030) | 3/498 | NT | 3.2% | coding (958/1452 nt) | trkH | potassium transporter |
| ? | NC_000913 | = 4034172 | 123 (0.930) | coding (1028/1452 nt) | trkH | potassium transporter | |||||
| * | ? | NC_000913 | = 3955675 | 168 (1.230) | 4 (0.030) | 4/500 | NT | 2.2% | coding (345/1545 nt) | ilvA | l‑threonine dehydratase, biosynthetic; also known as threonine deaminase |
| ? | NC_000913 | = 3955888 | 188 (1.420) | coding (558/1545 nt) | ilvA | l‑threonine dehydratase, biosynthetic; also known as threonine deaminase | |||||
| * | ? | NC_000913 | = 3904780 | 244 (1.780) | 3 (0.020) | 3/498 | NT | 1.2% | coding (818/1878 nt) | bglF | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component |
| ? | NC_000913 | = 3904870 | 275 (2.080) | coding (728/1878 nt) | bglF | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component | |||||
| * | ? | NC_000913 | 3154345 = | 131 (0.960) | 4 (0.030) | 4/498 | NT | 3.1% | coding (874/957 nt) | yqhC | transcriptional activator of yqhD |
| ? | NC_000913 | 3154376 = | 126 (0.950) | coding (843/957 nt) | yqhC | transcriptional activator of yqhD | |||||
| * | ? | NC_000913 | = 2720039 | 151 (1.100) | 3 (0.020) | 3/498 | NT | 2.0% | coding (87/2661 nt) | pka | protein lysine acetyltransferase |
| ? | NC_000913 | = 2720049 | 150 (1.130) | coding (97/2661 nt) | pka | protein lysine acetyltransferase | |||||
| * | ? | NC_000913 | = 2713829 | 133 (0.970) | 5 (0.040) | 5/494 | NT | 3.9% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase |
| ? | NC_000913 | = 2713908 | 122 (0.930) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase | |||||
| * | ? | NC_000913 | = 2531965 | 130 (0.950) | 4 (0.030) | 3/496 | NT | 2.7% | coding (503/762 nt) | cysZ | sulfate transporter, sulfite inhibited |
| ? | NC_000913 | = 2532167 | 165 (1.250) | coding (705/762 nt) | cysZ | sulfate transporter, sulfite inhibited | |||||
| * | ? | NC_000913 | 1985101 = | 118 (0.860) | 4 (0.030) | 4/494 | NT | 3.5% | intergenic (‑32/+38) | araG/araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1985124 = | 109 (0.830) | intergenic (‑55/+15) | araG/araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1800053 = | 118 (0.860) | 3 (0.020) | 3/506 | NT | 2.5% | intergenic (‑54/+43) | rpmI/infC | 50S ribosomal subunit protein L35/translation initiation factor IF‑3 |
| ? | NC_000913 | 1800077 = | 116 (0.860) | intergenic (‑78/+19) | rpmI/infC | 50S ribosomal subunit protein L35/translation initiation factor IF‑3 | |||||
| * | ? | NC_000913 | 1646853 = | 67 (0.490) | 3 (0.020) | 3/498 | NT | 2.9% | intergenic (+116/+321) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related |
| ? | NC_000913 | 1649105 = | 138 (1.040) | intergenic (+64/‑277) | ydfC/dicF | uncharacterized protein, Qin prophage/sRNA antisense regulator, inhibits ftsZ, Hfq‑dependent; Qin prophage | |||||