mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 22 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4436129 | 135 (1.070) | 3 (0.020) | 3/504 | NT | 2.0% | coding (437/1944 nt) | cpdB | 2':3'‑cyclic‑nucleotide 2'‑phosphodiesterase |
| ? | NC_000913 | = 4436330 | 163 (1.310) | coding (236/1944 nt) | cpdB | 2':3'‑cyclic‑nucleotide 2'‑phosphodiesterase | |||||
| * | ? | NC_000913 | 4319451 = | 144 (1.140) | 3 (0.020) | 3/490 | NT | 2.9% | coding (156/846 nt) | phnJ | carbon‑phosphorus lyase, SAM‑dependent |
| ? | NC_000913 | 4320122 = | 66 (0.550) | coding (542/1065 nt) | phnI | ribophosphonate triphosphate synthase complex putative catalytic subunit | |||||
| * | ? | NC_000913 | = 3594261 | 135 (1.070) | 3 (0.020) | 3/506 | NT | 2.2% | coding (1220/1278 nt) | livM | branched‑chain amino acid ABC transporter permease |
| ? | NC_000913 | = 3594476 | 139 (1.110) | coding (1005/1278 nt) | livM | branched‑chain amino acid ABC transporter permease | |||||
| * | ? | NC_000913 | = 3579387 | 152 (1.210) | 3 (0.020) | 3/490 | NT | 2.3% | coding (259/696 nt) | yhhW | quercetinase activity in vitro |
| ? | NC_000913 | = 3579470 | 113 (0.930) | coding (176/696 nt) | yhhW | quercetinase activity in vitro | |||||
| * | ? | NC_000913 | 3419955 = | 143 (1.130) | 5 (0.040) | 3/494 | NT | 3.7% | pseudogene (849/960 nt) | yhdW | pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
| ? | NC_000913 | 3420128 = | 125 (1.020) | intergenic (+62/‑6) | yhdW/yhdX | pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily/putative amino acid ABC transporter permease | |||||
| * | ? | NC_000913 | 3051052 = | 155 (1.230) | 3 (0.030) | 3/484 | NT | 2.1% | intergenic (‑385/+63) | gcvT/ubiI | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent |
| ? | NC_000913 | 3051235 = | 130 (1.090) | coding (1083/1203 nt) | ubiI | 2‑octaprenylphenol hydroxylase, FAD‑dependent | |||||
| * | ? | NC_000913 | = 3041643 | 141 (1.120) | 4 (0.030) | 4/486 | NT | 3.1% | coding (331/981 nt) | ygfZ | iron‑sulfur cluster repair protein, plumbagin resistance |
| ? | NC_000913 | = 3042745 | 113 (0.940) | coding (404/660 nt) | yqfA | hemolysin III family HylIII inner membrane protein | |||||
| * | ? | NC_000913 | 2833080 = | 138 (1.100) | 4 (0.030) | 4/492 | NT | 3.0% | coding (605/1440 nt) | norV | anaerobic nitric oxide reductase flavorubredoxin |
| ? | NC_000913 | 2833219 = | 126 (1.040) | coding (744/1440 nt) | norV | anaerobic nitric oxide reductase flavorubredoxin | |||||
| * | ? | NC_000913 | 2796365 = | 131 (1.040) | 5 (0.040) | 5/490 | NT | 3.9% | coding (422/450 nt) | ygaU | uncharacterized protein |
| ? | NC_000913 | 2796386 = | 123 (1.020) | coding (401/450 nt) | ygaU | uncharacterized protein | |||||
| * | ? | NC_000913 | = 2713829 | 107 (0.850) | 3 (0.020) | 3/488 | NT | 3.0% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase |
| ? | NC_000913 | = 2713908 | 94 (0.780) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase | |||||